Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7Q entry

There are 2 chains in PDB entry 5D7Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 54ALA 354
B
 GLU 56GLN 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5D7Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
85 92Right-handed 310
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
107 111Right-handed 310
Helix 5
AA5
A
114 119Right-handed 310
Helix 6
AA6
A
120 127Right-handed alpha
Helix 7
AA7
A
128 139Right-handed alpha
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
171 176Right-handed alpha
Helix 10
AB1
A
179 181Right-handed 310
Helix 11
AB2
A
206 215Right-handed alpha
Helix 12
AB3
A
240 251Right-handed alpha
Helix 13
AB4
A
268 270Right-handed 310
Helix 14
AB5
A
271 276Right-handed alpha
Helix 15
AB6
A
323 335Right-handed alpha
Helix 16
AB7
A
337 354Right-handed alpha
Helix 17
AB8
B
63 73Right-handed alpha
Helix 18
AB9
B
85 92Right-handed 310
Helix 19
AC1
B
102 106Right-handed 310
Helix 20
AC2
B
107 111Right-handed 310
Helix 21
AC3
B
114 119Right-handed 310
Helix 22
AC4
B
120 127Right-handed alpha
Helix 23
AC5
B
128 139Right-handed alpha
Helix 24
AC6
B
146 158Right-handed alpha
Helix 25
AC7
B
171 176Right-handed alpha
Helix 26
AC8
B
179 181Right-handed 310
Helix 27
AC9
B
206 215Right-handed alpha
Helix 28
AD1
B
240 251Right-handed alpha
Helix 29
AD2
B
268 276Right-handed 310
Helix 30
AD3
B
323 335Right-handed alpha
Helix 31
AD4
B
337 354Right-handed alpha
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There are 4 sheets in PDB entry 5D7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
161 166parallel
Strand 3
A
79 83parallel
Strand 4
A
256 260parallel
Strand 5
A
282 286parallel
Strand 6
A
317 321parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
188 195anti-parallel
Strand 3
A
228 232anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
161 166parallel
Strand 3
B
79 83parallel
Strand 4
B
256 260parallel
Strand 5
B
282 286parallel
Strand 6
B
317 321parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
188 195anti-parallel
Strand 3
B
228 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il