Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7V entry

There are 4 chains in PDB entry 5D7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 185HIS 452
B
 GLU 185HIS 448
C
 GLU 185HIS 448
D
 GLU 185HIS 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 5D7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 189Right-handed 310
Helix 2
AA2
A
222 226Right-handed 310
Helix 3
AA3
A
228 241Right-handed alpha
Helix 4
AA4
A
271 279Right-handed alpha
Helix 5
AA5
A
285 306Right-handed alpha
Helix 6
AA6
A
314 316Right-handed 310
Helix 7
AA7
A
322 324Right-handed 310
Helix 8
AA8
A
332 337Right-handed alpha
Helix 9
AA9
A
338 349Right-handed alpha
Helix 10
AB1
A
350 353Right-handed 310
Helix 11
AB2
A
355 361Right-handed alpha
Helix 12
AB3
A
365 382Right-handed alpha
Helix 13
AB4
A
392 402Right-handed alpha
Helix 14
AB5
A
413 424Right-handed alpha
Helix 15
AB6
A
427 431Right-handed 310
Helix 16
AB7
A
433 442Right-handed alpha
Helix 17
AB8
A
443 445Right-handed 310
Helix 18
AB9
B
187 189Right-handed 310
Helix 19
AC1
B
222 226Right-handed 310
Helix 20
AC2
B
228 240Right-handed alpha
Helix 21
AC3
B
271 279Right-handed alpha
Helix 22
AC4
B
285 306Right-handed alpha
Helix 23
AC5
B
314 316Right-handed 310
Helix 24
AC6
B
322 324Right-handed 310
Helix 25
AC7
B
332 337Right-handed alpha
Helix 26
AC8
B
338 344Right-handed alpha
Helix 27
AC9
B
344 349Right-handed alpha
Helix 28
AD1
B
350 353Right-handed 310
Helix 29
AD2
B
355 361Right-handed alpha
Helix 30
AD3
B
365 382Right-handed alpha
Helix 31
AD4
B
392 402Right-handed alpha
Helix 32
AD5
B
413 424Right-handed alpha
Helix 33
AD6
B
427 431Right-handed 310
Helix 34
AD7
B
433 442Right-handed alpha
Helix 35
AD8
B
443 445Right-handed 310
Helix 36
AD9
C
187 189Right-handed 310
Helix 37
AE1
C
222 226Right-handed 310
Helix 38
AE2
C
228 241Right-handed alpha
Helix 39
AE3
C
271 279Right-handed alpha
Helix 40
AE4
C
285 306Right-handed alpha
Helix 41
AE5
C
314 316Right-handed 310
Helix 42
AE6
C
322 324Right-handed 310
Helix 43
AE7
C
332 337Right-handed alpha
Helix 44
AE8
C
338 349Right-handed alpha
Helix 45
AE9
C
350 353Right-handed 310
Helix 46
AF1
C
355 361Right-handed alpha
Helix 47
AF2
C
365 382Right-handed alpha
Helix 48
AF3
C
392 402Right-handed alpha
Helix 49
AF4
C
413 424Right-handed alpha
Helix 50
AF5
C
427 431Right-handed 310
Helix 51
AF6
C
433 442Right-handed alpha
Helix 52
AF7
C
443 445Right-handed 310
Helix 53
AF8
D
187 189Right-handed 310
Helix 54
AF9
D
222 226Right-handed 310
Helix 55
AG1
D
228 241Right-handed alpha
Helix 56
AG2
D
271 278Right-handed alpha
Helix 57
AG3
D
285 306Right-handed alpha
Helix 58
AG4
D
314 316Right-handed 310
Helix 59
AG5
D
322 324Right-handed 310
Helix 60
AG6
D
332 337Right-handed alpha
Helix 61
AG7
D
338 344Right-handed alpha
Helix 62
AG8
D
344 349Right-handed alpha
Helix 63
AG9
D
350 353Right-handed 310
Helix 64
AH1
D
355 361Right-handed alpha
Helix 65
AH2
D
365 382Right-handed alpha
Helix 66
AH3
D
392 403Right-handed alpha
Helix 67
AH4
D
413 424Right-handed alpha
Helix 68
AH5
D
427 431Right-handed 310
Helix 69
AH6
D
433 443Right-handed alpha
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There are 8 sheets in PDB entry 5D7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 200first strand
Strand 2
A
203 210anti-parallel
Strand 3
A
214 221anti-parallel
Strand 4
A
260 265anti-parallel
Strand 5
A
252 254anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 200first strand
Strand 2
B
203 210anti-parallel
Strand 3
B
214 221anti-parallel
Strand 4
B
260 265anti-parallel
Strand 5
B
252 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
326 328anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 200first strand
Strand 2
C
203 210anti-parallel
Strand 3
C
214 221anti-parallel
Strand 4
C
260 265anti-parallel
Strand 5
C
252 254anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 320first strand
Strand 2
C
326 328anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 200first strand
Strand 2
D
203 210anti-parallel
Strand 3
D
214 221anti-parallel
Strand 4
D
260 265anti-parallel
Strand 5
D
252 254anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
318 320first strand
Strand 2
D
326 328anti-parallel
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