Analysis of interatomic Contacts of Structural Units in PDB entry:
5D7Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D7Z entry

There is 1 chain in PDB entry 5D7Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15HIS 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5D7Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
103 114Right-handed alpha
Helix 5
AA5
A
164 177Right-handed alpha
Helix 6
AA6
A
187 189Right-handed 310
Helix 7
AA7
A
200 204Right-handed 310
Helix 8
AA8
A
233 249Right-handed alpha
Helix 9
AA9
A
282 295Right-handed alpha
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There are 3 sheets in PDB entry 5D7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
24 31parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
276 281parallel
Strand 7
A
265 270anti-parallel
Strand 8
A
251 252anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
76 82anti-parallel
Strand 4
A
24 31parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
276 281parallel
Strand 7
A
265 270anti-parallel
Strand 8
A
257 258anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 124first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
94 101parallel
Strand 5
A
155 161anti-parallel
Strand 6
A
206 212parallel
Strand 7
A
191 197anti-parallel
Strand 8
A
179 186anti-parallel
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