Analysis of interatomic Contacts of Structural Units in PDB entry:
5D85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D85 entry

There is 1 chain in PDB entry 5D85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9GLN 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5D85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
38 41Right-handed 310
Helix 3
AA3
A
47 61Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
102 112Right-handed alpha
Helix 6
AA6
A
128 143Right-handed alpha
Helix 7
AA7
A
154 163Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
187 201Right-handed alpha
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
239 243Right-handed 310
Helix 12
AB3
A
250 266Right-handed alpha
Helix 13
AB4
A
270 284Right-handed alpha
Helix 14
AB5
A
285 287Right-handed 310
Helix 15
AB6
A
300 304Right-handed 310
Helix 16
AB7
A
310 321Right-handed alpha
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There are 2 sheets in PDB entry 5D85. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
292 296parallel
Strand 4
A
179 183parallel
Strand 5
A
205 211parallel
Strand 6
A
245 249parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
92 97parallel
Strand 3
A
69 73parallel
Strand 4
A
146 148parallel
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