Analysis of interatomic Contacts of Structural Units in PDB entry:
5D86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D86 entry

There is 1 chain in PDB entry 5D86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 8SER 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5D86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
38 41Right-handed 310
Helix 3
AA3
A
47 61Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
102 112Right-handed alpha
Helix 6
AA6
A
128 143Right-handed alpha
Helix 7
AA7
A
154 164Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
187 201Right-handed alpha
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
250 266Right-handed alpha
Helix 12
AB3
A
270 285Right-handed alpha
Helix 13
AB4
A
300 305Right-handed 310
Helix 14
AB5
A
310 319Right-handed alpha
Helix 15
AB6
A
320 325Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 5D86. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
292 296parallel
Strand 4
A
179 183parallel
Strand 5
A
205 211parallel
Strand 6
A
245 249parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
93 97parallel
Strand 3
A
69 73parallel
Strand 4
A
146 148parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il