Analysis of interatomic Contacts of Structural Units in PDB entry:
5D88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D88 entry

There is 1 chain in PDB entry 5D88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -20PRO 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5D88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
29 32Right-handed 310
Helix 3
AA3
A
42 56Right-handed alpha
Helix 4
AA4
A
71 76Right-handed 310
Helix 5
AA5
A
77 92Right-handed alpha
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
127 138Right-handed alpha
Helix 9
AA9
A
145 149Right-handed 310
Helix 10
AB1
A
151 162Right-handed alpha
Helix 11
AB2
A
179 194Right-handed alpha
Helix 12
AB3
A
205 209Right-handed 310
Helix 13
AB4
A
218 222Right-handed 310
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There are 2 sheets in PDB entry 5D88. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
23 27parallel
Strand 3
A
59 63parallel
Strand 4
A
97 100parallel
Strand 5
A
116 119parallel
Strand 6
A
141 143parallel
Strand 7
A
165 170parallel
Strand 8
A
224 227parallel
Strand 9
A
3 7parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
213 214anti-parallel
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