Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8A entry

There are 4 chains in PDB entry 5D8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LYS 210
B
 ASP 12GLU 218
C
 GLY 1GLN 221
D
 SER 15ALA 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5D8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
14 19Right-handed 310
Helix 3
AA3
A
27 30Right-handed 310
Helix 4
AA4
A
31 37Right-handed alpha
Helix 5
AA5
A
52 56Right-handed 310
Helix 6
AA6
A
60 68Right-handed alpha
Helix 7
AA7
A
94 100Right-handed 310
Helix 8
AA8
B
45 49Right-handed 310
Helix 9
AA9
B
56 59Right-handed 310
Helix 10
AB1
B
89 97Right-handed alpha
Helix 11
AB2
B
135 143Right-handed 310
Helix 12
AB3
C
43 51Right-handed alpha
Helix 13
AB4
C
83 87Right-handed 310
Helix 14
AB5
C
89 96Right-handed alpha
Helix 15
AB6
C
136 141Right-handed alpha
Helix 16
AB7
D
27 32Right-handed alpha
Helix 17
AB8
D
66 74Right-handed alpha
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There are 11 sheets in PDB entry 5D8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
171 187anti-parallel
Strand 3
A
69 83anti-parallel
Strand 4
A
113 117anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
171 187anti-parallel
Strand 3
A
69 83anti-parallel
Strand 4
A
126 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
166 168anti-parallel
Strand 3
A
86 89anti-parallel
Strand 4
A
105 106anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 26anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
155 160parallel
Strand 3
B
98 112anti-parallel
Strand 4
B
197 213anti-parallel
Strand 5
B
53 54anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
155 160parallel
Strand 3
B
98 112anti-parallel
Strand 4
B
197 213anti-parallel
Strand 5
B
62 69anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
177 188anti-parallel
Strand 3
B
118 127anti-parallel
Strand 4
B
145 148anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
199 206anti-parallel
Strand 3
C
63 65anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
199 206anti-parallel
Strand 3
C
105 111anti-parallel
Strand 4
C
155 160anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 78first strand
Strand 2
C
184 193anti-parallel
Strand 3
C
118 126anti-parallel
Strand 4
C
144 149anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 170first strand
Strand 2
C
98 102anti-parallel
Strand 3
C
211 215anti-parallel
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