Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8F entry

There are 3 chains in PDB entry 5D8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4HIS 112
B
 GLU 4HIS 111
C
 T 1 T 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5D8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
B
6 10Right-handed 310
Helix 3
AA3
B
57 62Right-handed 310
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There are 2 sheets in PDB entry 5D8F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
81 85parallel
Strand 5
B
67 78anti-parallel
Strand 6
B
91 110anti-parallel
Strand 7
A
81 109anti-parallel
Strand 8
A
67 78anti-parallel
Strand 9
A
17 31anti-parallel
Strand 10
A
37 45anti-parallel
Strand 11
A
48 55anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
37 45anti-parallel
Strand 3
B
17 26anti-parallel
Strand 4
B
67 78anti-parallel
Strand 5
B
91 110anti-parallel
Strand 6
A
81 109anti-parallel
Strand 7
A
48 55parallel
Strand 8
A
37 45anti-parallel
Strand 9
A
17 31anti-parallel
Strand 10
A
67 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il