Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8G entry

There are 3 chains in PDB entry 5D8G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 297
A
 VAL 299VAL 351
A
 GLN 353VAL 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5D8G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
60 67Right-handed alpha
Helix 5
AA5
A
77 92Right-handed alpha
Helix 6
AA6
A
105 122Right-handed alpha
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
172 184Right-handed alpha
Helix 9
AA9
A
185 188Right-handed 310
Helix 10
AB1
A
198 202Right-handed 310
Helix 11
AB2
A
206 220Right-handed alpha
Helix 12
AB3
A
230 242Right-handed alpha
Helix 13
AB4
A
243 246Right-handed 310
Helix 14
AB5
A
249 258Right-handed alpha
Helix 15
AB6
A
259 261Right-handed 310
Helix 16
AB7
A
284 286Right-handed 310
Helix 17
AB8
A
287 301Right-handed alpha
Helix 18
AB9
A
311 325Right-handed alpha
Helix 19
AC1
A
327 348Right-handed alpha
Helix 20
AC2
A
364 368Right-handed alpha
Helix 21
AC3
A
372 375Right-handed 310
Helix 22
AC4
A
376 390Right-handed alpha
Helix 23
AC5
A
397 402Right-handed alpha
Helix 24
AC6
A
428 445Right-handed alpha
Helix 25
AC7
A
446 449Right-handed 310
Helix 26
AC8
A
461 466Right-handed alpha
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There are 4 sheets in PDB entry 5D8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
391 392parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
263 267anti-parallel
Strand 4
A
224 227parallel
Strand 5
A
191 194parallel
Strand 6
A
129 132parallel
Strand 7
A
149 152parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
394 396anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 456first strand
Strand 2
A
467 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il