Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8H entry

There are 7 chains in PDB entry 5D8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 1151 C 1224
B
 MSE 9GLU 215
C
 ALA 1LYS 158
D
 ILE 1ALA 2
D
 ALA 4SER 5
D
 THR 7THR 7
D
 THR 12THR 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5D8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 27Right-handed alpha
Helix 2
AA2
B
39 50Right-handed alpha
Helix 3
AA3
B
60 75Right-handed alpha
Helix 4
AA4
B
77 83Right-handed alpha
Helix 5
AA5
B
84 87Right-handed 310
Helix 6
AA6
B
99 110Right-handed alpha
Helix 7
AA7
B
140 144Right-handed 310
Helix 8
AA8
B
174 184Right-handed alpha
Helix 9
AA9
B
206 212Right-handed alpha
Helix 10
AB1
C
19 25Right-handed alpha
Helix 11
AB2
C
26 28Right-handed 310
Helix 12
AB3
C
32 42Right-handed alpha
Helix 13
AB4
C
43 46Right-handed 310
Helix 14
AB5
C
71 78Right-handed alpha
Helix 15
AB6
C
98 110Right-handed alpha
Helix 16
AB7
C
111 113Right-handed 310
Helix 17
AB8
C
117 131Right-handed alpha
Helix 18
AB9
C
140 150Right-handed alpha
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There are 5 sheets in PDB entry 5D8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
194 200anti-parallel
Strand 5
B
203 205anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
189 191anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
157 160anti-parallel
Strand 3
B
151 154anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 10first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
65 67anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 97first strand
Strand 2
C
135 136parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il