Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8I entry

There are 2 chains in PDB entry 5D8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 38ARG 274
B
 VAL 37ARG 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 5D8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 58Right-handed alpha
Helix 2
AA2
A
73 90Right-handed alpha
Helix 3
AA3
A
91 94Right-handed 310
Helix 4
AA4
A
106 116Right-handed alpha
Helix 5
AA5
A
145 160Right-handed alpha
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
181 186Right-handed alpha
Helix 8
AA8
A
201 210Right-handed alpha
Helix 9
AA9
A
225 232Right-handed alpha
Helix 10
AB1
A
258 268Right-handed alpha
Helix 11
AB2
B
52 58Right-handed alpha
Helix 12
AB3
B
73 90Right-handed alpha
Helix 13
AB4
B
91 94Right-handed 310
Helix 14
AB5
B
106 116Right-handed alpha
Helix 15
AB6
B
145 159Right-handed alpha
Helix 16
AB7
B
160 164Right-handed 310
Helix 17
AB8
B
175 180Right-handed alpha
Helix 18
AB9
B
181 186Right-handed alpha
Helix 19
AC1
B
201 210Right-handed alpha
Helix 20
AC2
B
225 232Right-handed alpha
Helix 21
AC3
B
258 268Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5D8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
97 103parallel
Strand 3
A
63 69parallel
Strand 4
A
123 127anti-parallel
Strand 5
A
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
190 196parallel
Strand 3
A
239 244anti-parallel
Strand 4
A
249 251anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
97 103parallel
Strand 3
B
63 69parallel
Strand 4
B
123 127anti-parallel
Strand 5
B
137 139anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 222first strand
Strand 2
B
190 196parallel
Strand 3
B
239 244anti-parallel
Strand 4
B
249 251anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il