Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8M entry

There is 1 chain in PDB entry 5D8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 82LEU 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5D8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 91Right-handed alpha
Helix 2
AA2
A
98 103Right-handed 310
Helix 3
AA3
A
107 123Right-handed alpha
Helix 4
AA4
A
171 175Right-handed 310
Helix 5
AA5
A
181 183Right-handed 310
Helix 6
AA6
A
184 191Right-handed alpha
Helix 7
AA7
A
205 218Right-handed alpha
Helix 8
AA8
A
233 245Right-handed alpha
Helix 9
AA9
A
245 251Right-handed alpha
Helix 10
AB1
A
266 271Right-handed alpha
Helix 11
AB2
A
272 282Right-handed alpha
Helix 12
AB3
A
293 298Right-handed alpha
Helix 13
AB4
A
300 311Right-handed alpha
Helix 14
AB5
A
327 331Right-handed 310
Helix 15
AB6
A
332 334Right-handed 310
Helix 16
AB7
A
335 344Right-handed alpha
Helix 17
AB8
A
354 358Right-handed 310
Helix 18
AB9
A
385 391Right-handed alpha
Helix 19
AC1
A
397 413Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5D8M.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
364 367parallel
Strand 3
A
318 322parallel
Strand 4
A
252 258parallel
Strand 5
A
225 231parallel
Strand 6
A
161 166parallel
Strand 7
A
194 197parallel
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