Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8N entry

There are 3 chains in PDB entry 5D8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 55ASN 571
B
 ALA 55ASN 571
C
 ALA 55LEU 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5D8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
80 84Right-handed 310
Helix 3
AA3
A
96 99Right-handed 310
Helix 4
AA4
A
108 118Right-handed alpha
Helix 5
AA5
A
120 129Right-handed alpha
Helix 6
AA6
A
160 177Right-handed alpha
Helix 7
AA7
A
193 213Right-handed alpha
Helix 8
AA8
A
238 264Right-handed alpha
Helix 9
AA9
A
270 285Right-handed alpha
Helix 10
AB1
A
295 302Right-handed alpha
Helix 11
AB2
A
304 312Right-handed alpha
Helix 12
AB3
A
368 385Right-handed alpha
Helix 13
AB4
A
429 444Right-handed alpha
Helix 14
AB5
A
457 464Right-handed alpha
Helix 15
AB6
A
474 489Right-handed alpha
Helix 16
AB7
A
498 506Right-handed 310
Helix 17
AB8
A
520 531Right-handed alpha
Helix 18
AB9
A
560 570Right-handed alpha
Helix 19
AC1
B
58 62Right-handed 310
Helix 20
AC2
B
80 84Right-handed 310
Helix 21
AC3
B
96 99Right-handed 310
Helix 22
AC4
B
108 118Right-handed alpha
Helix 23
AC5
B
120 129Right-handed alpha
Helix 24
AC6
B
160 177Right-handed alpha
Helix 25
AC7
B
193 213Right-handed alpha
Helix 26
AC8
B
238 264Right-handed alpha
Helix 27
AC9
B
270 285Right-handed alpha
Helix 28
AD1
B
295 302Right-handed alpha
Helix 29
AD2
B
304 312Right-handed alpha
Helix 30
AD3
B
368 385Right-handed alpha
Helix 31
AD4
B
425 428Right-handed 310
Helix 32
AD5
B
429 444Right-handed alpha
Helix 33
AD6
B
457 464Right-handed alpha
Helix 34
AD7
B
474 489Right-handed alpha
Helix 35
AD8
B
498 506Right-handed 310
Helix 36
AD9
B
520 531Right-handed alpha
Helix 37
AE1
B
560 571Right-handed alpha
Helix 38
AE2
C
58 62Right-handed 310
Helix 39
AE3
C
80 84Right-handed 310
Helix 40
AE4
C
95 99Right-handed 310
Helix 41
AE5
C
108 118Right-handed alpha
Helix 42
AE6
C
120 129Right-handed alpha
Helix 43
AE7
C
160 177Right-handed alpha
Helix 44
AE8
C
193 213Right-handed alpha
Helix 45
AE9
C
238 264Right-handed alpha
Helix 46
AF1
C
270 285Right-handed alpha
Helix 47
AF2
C
295 302Right-handed alpha
Helix 48
AF3
C
304 312Right-handed alpha
Helix 49
AF4
C
368 385Right-handed alpha
Helix 50
AF5
C
425 428Right-handed 310
Helix 51
AF6
C
429 444Right-handed alpha
Helix 52
AF7
C
457 464Right-handed alpha
Helix 53
AF8
C
474 489Right-handed alpha
Helix 54
AF9
C
498 506Right-handed 310
Helix 55
AG1
C
520 531Right-handed alpha
Helix 56
AG2
C
560 570Right-handed alpha
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There are 12 sheets in PDB entry 5D8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
229 233parallel
Strand 3
A
181 186parallel
Strand 4
A
88 94parallel
Strand 5
A
146 154parallel
Strand 6
A
138 143anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 294first strand
Strand 2
A
320 326anti-parallel
Strand 3
A
389 400anti-parallel
Strand 4
A
335 347parallel
Strand 5
A
448 453parallel
Strand 6
A
538 543parallel
Strand 7
A
468 471anti-parallel
Strand 8
A
492 494parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
420 422anti-parallel
Strand 3
A
512 513parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 550first strand
Strand 2
A
555 556anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
229 233parallel
Strand 3
B
181 186parallel
Strand 4
B
88 94parallel
Strand 5
B
146 154parallel
Strand 6
B
138 143anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 294first strand
Strand 2
B
320 326anti-parallel
Strand 3
B
389 400anti-parallel
Strand 4
B
335 347parallel
Strand 5
B
448 453parallel
Strand 6
B
538 543parallel
Strand 7
B
468 471anti-parallel
Strand 8
B
492 494parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 414first strand
Strand 2
B
420 422anti-parallel
Strand 3
B
512 513parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 550first strand
Strand 2
B
555 556anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 77first strand
Strand 2
C
229 233parallel
Strand 3
C
181 186parallel
Strand 4
C
88 93parallel
Strand 5
C
146 152parallel
Strand 6
C
138 143anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 294first strand
Strand 2
C
320 326anti-parallel
Strand 3
C
389 400anti-parallel
Strand 4
C
335 347parallel
Strand 5
C
448 453parallel
Strand 6
C
538 543parallel
Strand 7
C
468 471anti-parallel
Strand 8
C
492 494parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
412 414first strand
Strand 2
C
420 422anti-parallel
Strand 3
C
512 513parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
549 550first strand
Strand 2
C
555 556anti-parallel
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