Analysis of interatomic Contacts of Structural Units in PDB entry:
5D8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D8W entry

There are 2 chains in PDB entry 5D8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22ALA 345
B
 LEU 22ALA 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5D8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 69Right-handed alpha
Helix 2
AA2
A
80 86Right-handed alpha
Helix 3
AA3
A
94 111Right-handed alpha
Helix 4
AA4
A
136 150Right-handed alpha
Helix 5
AA5
A
170 188Right-handed alpha
Helix 6
AA6
A
199 204Right-handed alpha
Helix 7
AA7
A
212 218Right-handed alpha
Helix 8
AA8
A
257 268Right-handed alpha
Helix 9
AA9
A
282 299Right-handed alpha
Helix 10
AB1
A
334 340Right-handed alpha
Helix 11
AB2
B
43 47Right-handed 310
Helix 12
AB3
B
58 69Right-handed alpha
Helix 13
AB4
B
80 86Right-handed alpha
Helix 14
AB5
B
94 110Right-handed alpha
Helix 15
AB6
B
136 152Right-handed alpha
Helix 16
AB7
B
170 188Right-handed alpha
Helix 17
AB8
B
212 219Right-handed alpha
Helix 18
AB9
B
257 268Right-handed alpha
Helix 19
AC1
B
282 298Right-handed alpha
Helix 20
AC2
B
334 340Right-handed alpha
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There are 6 sheets in PDB entry 5D8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
74 79parallel
Strand 3
A
114 119parallel
Strand 4
A
157 160parallel
Strand 5
A
194 198parallel
Strand 6
A
230 235parallel
Strand 7
A
272 277parallel
Strand 8
A
303 312parallel
Strand 9
A
24 30parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
331 332anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 30first strand
Strand 2
B
74 79parallel
Strand 3
B
114 119parallel
Strand 4
B
157 160parallel
Strand 5
B
195 198parallel
Strand 6
B
230 235parallel
Strand 7
B
272 277parallel
Strand 8
B
303 312parallel
Strand 9
B
24 30parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
128 129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 327first strand
Strand 2
B
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il