Analysis of interatomic Contacts of Structural Units in PDB entry:
5D94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D94 entry

There are 2 chains in PDB entry 5D94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 123
B
 ASP 1277LEU 1288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5D94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
12 27Right-handed alpha
Helix 3
AA3
A
59 71Right-handed alpha
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
B
1284 1288Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5D94.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
30 37parallel
Strand 5
A
51 55anti-parallel
Strand 6
B
1281 1282parallel
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