Analysis of interatomic Contacts of Structural Units in PDB entry:
5D96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D96 entry

There are 6 chains in PDB entry 5D96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 38	ARG 274
I	ASP 1	CYS 214
J	GLN 1	CYS 220
A	LEU 38	ARG 274
B	ASP 1	CYS 214
C	GLN 1	CYS 220

There are 33 helices in PDB entry 5D96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	52	58	Right-handed alpha
Helix 2	AA2	D	73	90	Right-handed alpha
Helix 3	AA3	D	91	94	Right-handed 310
Helix 4	AA4	D	106	115	Right-handed alpha
Helix 5	AA5	D	145	158	Right-handed alpha
Helix 6	AA6	D	175	180	Right-handed alpha
Helix 7	AA7	D	181	185	Right-handed 310
Helix 8	AA8	D	201	210	Right-handed alpha
Helix 9	AA9	D	225	232	Right-handed alpha
Helix 10	AB1	D	258	268	Right-handed alpha
Helix 11	AB2	I	79	83	Right-handed 310
Helix 12	AB3	I	121	126	Right-handed alpha
Helix 13	AB4	I	183	187	Right-handed alpha
Helix 14	AB5	J	61	64	Right-handed 310
Helix 15	AB6	J	86	90	Right-handed 310
Helix 16	AB7	J	161	163	Right-handed 310
Helix 17	AB8	A	52	58	Right-handed alpha
Helix 18	AB9	A	73	90	Right-handed alpha
Helix 19	AC1	A	91	94	Right-handed 310
Helix 20	AC2	A	106	114	Right-handed alpha
Helix 21	AC3	A	115	117	Right-handed 310
Helix 22	AC4	A	145	158	Right-handed alpha
Helix 23	AC5	A	175	180	Right-handed alpha
Helix 24	AC6	A	181	185	Right-handed 310
Helix 25	AC7	A	201	210	Right-handed alpha
Helix 26	AC8	A	225	233	Right-handed alpha
Helix 27	AC9	A	258	268	Right-handed alpha
Helix 28	AD1	B	79	83	Right-handed 310
Helix 29	AD2	B	121	127	Right-handed alpha
Helix 30	AD3	B	183	187	Right-handed alpha
Helix 31	AD4	C	61	64	Right-handed 310
Helix 32	AD5	C	86	90	Right-handed 310
Helix 33	AD6	C	161	163	Right-handed 310

There are 26 sheets in PDB entry 5D96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	97	103	parallel
Strand 3	D	63	69	parallel
Strand 4	D	123	127	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	222	first strand
Strand 2	D	190	196	parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	249	251	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	129	139	anti-parallel
Strand 3	I	173	182	anti-parallel
Strand 4	I	159	163	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	155	first strand
Strand 2	I	145	150	anti-parallel
Strand 3	I	191	197	anti-parallel
Strand 4	I	205	210	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	91	98	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	91	98	anti-parallel
Strand 4	J	105	108	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	140	150	anti-parallel
Strand 3	J	179	189	anti-parallel
Strand 4	J	168	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	129	first strand
Strand 2	J	140	150	anti-parallel
Strand 3	J	179	189	anti-parallel
Strand 4	J	174	176	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	159	first strand
Strand 2	J	199	204	anti-parallel
Strand 3	J	209	214	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	97	103	parallel
Strand 3	A	63	69	parallel
Strand 4	A	123	127	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	190	196	parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	249	251	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	102	106	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	191	197	anti-parallel
Strand 4	B	205	210	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	44	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	112	116	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	105	108	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	140	150	anti-parallel
Strand 3	C	179	189	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	199	204	anti-parallel
Strand 3	C	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D96

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D96