Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9G entry

There are 4 chains in PDB entry 5D9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLU 256
B
 GLY 11GLU 256
C
 LEU 11GLN 14
D
 GLU 9GLN 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5D9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
68 74Right-handed alpha
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
137 143Right-handed alpha
Helix 5
AA5
A
222 225Right-handed 310
Helix 6
AA6
A
228 233Right-handed 310
Helix 7
AA7
A
234 239Right-handed alpha
Helix 8
AA8
A
240 242Right-handed 310
Helix 9
AA9
B
29 40Right-handed alpha
Helix 10
AB1
B
68 75Right-handed alpha
Helix 11
AB2
B
82 87Right-handed alpha
Helix 12
AB3
B
137 142Right-handed alpha
Helix 13
AB4
B
222 224Right-handed 310
Helix 14
AB5
B
228 233Right-handed 310
Helix 15
AB6
B
234 239Right-handed alpha
Helix 16
AB7
B
240 242Right-handed 310
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There are 4 sheets in PDB entry 5D9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
18 23anti-parallel
Strand 5
A
12 15anti-parallel
Strand 6
B
149 158anti-parallel
Strand 7
B
48 49anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
54 59anti-parallel
Strand 4
A
18 23anti-parallel
Strand 5
A
12 15anti-parallel
Strand 6
B
149 158anti-parallel
Strand 7
B
164 175anti-parallel
Strand 8
B
178 189anti-parallel
Strand 9
B
193 204anti-parallel
Strand 10
B
209 220anti-parallel
Strand 11
B
244 253anti-parallel
Strand 12
B
128 131anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
149 158anti-parallel
Strand 3
A
164 175anti-parallel
Strand 4
A
178 189anti-parallel
Strand 5
A
193 204anti-parallel
Strand 6
A
209 220anti-parallel
Strand 7
A
244 253anti-parallel
Strand 8
A
128 131anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
149 158anti-parallel
Strand 3
B
12 15anti-parallel
Strand 4
B
18 23anti-parallel
Strand 5
B
54 59anti-parallel
Strand 6
B
64 67anti-parallel
Strand 7
B
119 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il