Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9H entry

There are 2 chains in PDB entry 5D9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 65LEU 363
B
 ALA 65THR 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5D9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 73Right-handed 310
Helix 2
AA2
A
114 124Right-handed alpha
Helix 3
AA3
A
157 167Right-handed alpha
Helix 4
AA4
A
177 198Right-handed alpha
Helix 5
AA5
A
206 208Right-handed 310
Helix 6
AA6
A
224 230Right-handed alpha
Helix 7
AA7
A
231 237Right-handed 310
Helix 8
AA8
A
252 257Right-handed alpha
Helix 9
AA9
A
264 281Right-handed alpha
Helix 10
AB1
A
289 300Right-handed alpha
Helix 11
AB2
A
319 330Right-handed alpha
Helix 12
AB3
A
333 337Right-handed 310
Helix 13
AB4
A
339 345Right-handed alpha
Helix 14
AB5
A
346 352Right-handed 310
Helix 15
AB6
A
354 362Right-handed alpha
Helix 16
AB7
B
71 73Right-handed 310
Helix 17
AB8
B
114 126Right-handed alpha
Helix 18
AB9
B
157 167Right-handed alpha
Helix 19
AC1
B
177 197Right-handed alpha
Helix 20
AC2
B
206 208Right-handed 310
Helix 21
AC3
B
224 231Right-handed alpha
Helix 22
AC4
B
232 237Right-handed 310
Helix 23
AC5
B
252 257Right-handed alpha
Helix 24
AC6
B
264 281Right-handed alpha
Helix 25
AC7
B
289 300Right-handed alpha
Helix 26
AC8
B
313 318Right-handed 310
Helix 27
AC9
B
319 330Right-handed alpha
Helix 28
AD1
B
339 345Right-handed alpha
Helix 29
AD2
B
346 351Right-handed 310
Helix 30
AD3
B
354 362Right-handed alpha
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There are 4 sheets in PDB entry 5D9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
145 151anti-parallel
Strand 5
A
136 141anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
218 220anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 83first strand
Strand 2
B
87 94anti-parallel
Strand 3
B
99 107anti-parallel
Strand 4
B
145 151anti-parallel
Strand 5
B
136 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
218 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il