Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9I entry

There are 6 chains in PDB entry 5D9I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 129LEU 215
A
 THR 217SER 261
B
 GLY 129LEU 215
B
 THR 217GLU 260
X
 G 1 C 21
Y
 A 1 A 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5D9I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
129 134Right-handed alpha
Helix 2
AA2
A
139 146Right-handed 310
Helix 3
AA3
A
164 180Right-handed alpha
Helix 4
AA4
A
204 216Right-handed alpha
Helix 5
AA5
A
228 237Right-handed alpha
Helix 6
AA6
A
253 258Right-handed 310
Helix 7
AA7
B
130 134Right-handed alpha
Helix 8
AA8
B
139 146Right-handed 310
Helix 9
AA9
B
164 180Right-handed alpha
Helix 10
AB1
B
205 216Right-handed alpha
Helix 11
AB2
B
228 237Right-handed alpha
Helix 12
AB3
B
253 258Right-handed 310
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There are 2 sheets in PDB entry 5D9I. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
156 163anti-parallel
Strand 3
A
192 203anti-parallel
Strand 4
A
183 189anti-parallel
Strand 5
A
241 246anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 225first strand
Strand 2
B
155 163anti-parallel
Strand 3
B
192 204anti-parallel
Strand 4
B
183 189anti-parallel
Strand 5
B
241 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il