Analysis of interatomic Contacts of Structural Units in PDB entry:
5D9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D9M entry

There are 2 chains in PDB entry 5D9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ASN 352
B
 THR 7ASN 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5D9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
54 64Right-handed alpha
Helix 4
AA4
A
75 79Right-handed 310
Helix 5
AA5
A
86 104Right-handed alpha
Helix 6
AA6
A
126 148Right-handed alpha
Helix 7
AA7
A
176 196Right-handed alpha
Helix 8
AA8
A
197 202Right-handed 310
Helix 9
AA9
A
210 213Right-handed 310
Helix 10
AB1
A
215 221Right-handed alpha
Helix 11
AB2
A
244 249Right-handed alpha
Helix 12
AB3
A
253 271Right-handed alpha
Helix 13
AB4
A
285 289Right-handed 310
Helix 14
AB5
A
296 317Right-handed alpha
Helix 15
AB6
A
329 334Right-handed 310
Helix 16
AB7
A
340 352Right-handed alpha
Helix 17
AB8
B
12 21Right-handed alpha
Helix 18
AB9
B
40 46Right-handed alpha
Helix 19
AC1
B
54 64Right-handed alpha
Helix 20
AC2
B
75 79Right-handed 310
Helix 21
AC3
B
86 104Right-handed alpha
Helix 22
AC4
B
126 148Right-handed alpha
Helix 23
AC5
B
176 196Right-handed alpha
Helix 24
AC6
B
197 202Right-handed 310
Helix 25
AC7
B
210 213Right-handed 310
Helix 26
AC8
B
215 221Right-handed alpha
Helix 27
AC9
B
244 249Right-handed alpha
Helix 28
AD1
B
253 271Right-handed alpha
Helix 29
AD2
B
285 289Right-handed 310
Helix 30
AD3
B
296 317Right-handed alpha
Helix 31
AD4
B
329 334Right-handed 310
Helix 32
AD5
B
340 353Right-handed alpha
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There are 2 sheets in PDB entry 5D9M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
66 71parallel
Strand 3
A
106 110parallel
Strand 4
A
155 158parallel
Strand 5
A
205 208parallel
Strand 6
A
233 239parallel
Strand 7
A
276 281parallel
Strand 8
A
321 324parallel
Strand 9
A
22 25parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
66 71parallel
Strand 3
B
106 110parallel
Strand 4
B
155 158parallel
Strand 5
B
205 208parallel
Strand 6
B
233 239parallel
Strand 7
B
276 281parallel
Strand 8
B
321 324parallel
Strand 9
B
22 25parallel
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