Analysis of interatomic Contacts of Structural Units in PDB entry:
5DA0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DA0 entry

There are 2 chains in PDB entry 5DA0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14LEU 484
B
 GLU 9SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5DA0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
34 46Right-handed alpha
Helix 3
AA3
A
49 68Right-handed alpha
Helix 4
AA4
A
78 90Right-handed alpha
Helix 5
AA5
A
95 114Right-handed alpha
Helix 6
AA6
A
116 123Right-handed 310
Helix 7
AA7
A
124 143Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
151 168Right-handed alpha
Helix 10
AB1
A
176 193Right-handed alpha
Helix 11
AB2
A
198 203Right-handed alpha
Helix 12
AB3
A
219 253Right-handed alpha
Helix 13
AB4
A
258 275Right-handed alpha
Helix 14
AB5
A
284 294Right-handed alpha
Helix 15
AB6
A
298 316Right-handed alpha
Helix 16
AB7
A
316 321Right-handed alpha
Helix 17
AB8
A
324 341Right-handed alpha
Helix 18
AB9
A
352 370Right-handed alpha
Helix 19
AC1
A
371 392Right-handed alpha
Helix 20
AC2
A
419 426Right-handed alpha
Helix 21
AC3
A
447 465Right-handed alpha
Helix 22
AC4
A
475 479Right-handed 310
Helix 23
AC5
A
480 484Right-handed 310
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There are 2 sheets in PDB entry 5DA0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 401first strand
Strand 2
A
407 415anti-parallel
Strand 3
A
435 445parallel
Strand 4
A
467 471parallel
Strand 5
B
60 63parallel
Strand 6
B
48 55anti-parallel
Strand 7
B
36 42anti-parallel
Strand 8
B
95 100anti-parallel
Strand 9
B
115 123anti-parallel
Strand 10
B
13 15parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
81 86anti-parallel
Strand 3
B
72 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il