Analysis of interatomic Contacts of Structural Units in PDB entry:
5DA3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DA3 entry

There is 1 chain in PDB entry 5DA3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 185HIS 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5DA3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 189Right-handed 310
Helix 2
AA2
A
222 226Right-handed 310
Helix 3
AA3
A
232 241Right-handed alpha
Helix 4
AA4
A
271 278Right-handed alpha
Helix 5
AA5
A
285 306Right-handed alpha
Helix 6
AA6
A
314 316Right-handed 310
Helix 7
AA7
A
322 324Right-handed 310
Helix 8
AA8
A
332 337Right-handed alpha
Helix 9
AA9
A
338 344Right-handed alpha
Helix 10
AB1
A
344 349Right-handed alpha
Helix 11
AB2
A
350 353Right-handed 310
Helix 12
AB3
A
355 362Right-handed alpha
Helix 13
AB4
A
365 381Right-handed alpha
Helix 14
AB5
A
392 402Right-handed alpha
Helix 15
AB6
A
413 424Right-handed alpha
Helix 16
AB7
A
427 431Right-handed 310
Helix 17
AB8
A
433 443Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5DA3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 200first strand
Strand 2
A
203 210anti-parallel
Strand 3
A
214 221anti-parallel
Strand 4
A
260 264anti-parallel
Strand 5
A
250 254anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
326 328anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il