Analysis of interatomic Contacts of Structural Units in PDB entry:
5DA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DA9 entry

There are 4 chains in PDB entry 5DA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 1311
B
 SER 2ARG 1312
C
 SER 438SER 522
D
 ILE 439PHE 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5DA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
132 145Right-handed alpha
Helix 4
AA4
A
147 154Right-handed alpha
Helix 5
AA5
A
158 162Right-handed 310
Helix 6
AA6
A
163 167Right-handed 310
Helix 7
AA7
A
168 181Right-handed alpha
Helix 8
AA8
A
181 224Right-handed alpha
Helix 9
AA9
A
1100 1160Right-handed alpha
Helix 10
AB1
A
1208 1228Right-handed alpha
Helix 11
AB2
A
1244 1264Right-handed alpha
Helix 12
AB3
A
1276 1285Right-handed alpha
Helix 13
AB4
B
39 53Right-handed alpha
Helix 14
AB5
B
68 72Right-handed 310
Helix 15
AB6
B
105 107Right-handed 310
Helix 16
AB7
B
132 145Right-handed alpha
Helix 17
AB8
B
147 154Right-handed alpha
Helix 18
AB9
B
163 167Right-handed 310
Helix 19
AC1
B
168 181Right-handed alpha
Helix 20
AC2
B
181 203Right-handed alpha
Helix 21
AC3
B
1116 1160Right-handed alpha
Helix 22
AC4
B
1208 1228Right-handed alpha
Helix 23
AC5
B
1244 1264Right-handed alpha
Helix 24
AC6
B
1276 1285Right-handed alpha
Helix 25
AC7
C
440 452Right-handed alpha
Helix 26
AC8
C
458 472Right-handed alpha
Helix 27
AC9
C
476 496Right-handed alpha
Helix 28
AD1
C
497 504Right-handed alpha
Helix 29
AD2
C
505 522Right-handed alpha
Helix 30
AD3
D
441 452Right-handed alpha
Helix 31
AD4
D
458 472Right-handed alpha
Helix 32
AD5
D
476 486Right-handed alpha
Helix 33
AD6
D
510 520Right-handed alpha
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There are 6 sheets in PDB entry 5DA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
3 10anti-parallel
Strand 3
A
76 86anti-parallel
Strand 4
A
92 103anti-parallel
Strand 5
A
109 122anti-parallel
Strand 6
A
125 130anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1232 1237first strand
Strand 2
A
1268 1274parallel
Strand 3
A
29 33parallel
Strand 4
A
1291 1297parallel
Strand 5
A
1303 1309anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1167 1177first strand
Strand 2
A
1185 1195anti-parallel
Strand 3
A
1201 1202anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
3 10anti-parallel
Strand 3
B
76 86anti-parallel
Strand 4
B
92 103anti-parallel
Strand 5
B
109 122anti-parallel
Strand 6
B
125 130anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1232 1237first strand
Strand 2
B
1268 1274parallel
Strand 3
B
29 34parallel
Strand 4
B
1291 1297parallel
Strand 5
B
1303 1309anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1167 1178first strand
Strand 2
B
1184 1196anti-parallel
Strand 3
B
1199 1202anti-parallel
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