Analysis of interatomic Contacts of Structural Units in PDB entry:
5DAC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DAC entry

There are 4 chains in PDB entry 5DAC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ARG 1312
B	SER 2	THR 1311
C	C 1	C 15
D	G 1	G 15

There are 26 helices in PDB entry 5DAC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	53	Right-handed alpha
Helix 2	AA2	A	68	73	Right-handed alpha
Helix 3	AA3	A	132	145	Right-handed alpha
Helix 4	AA4	A	147	154	Right-handed alpha
Helix 5	AA5	A	158	162	Right-handed 310
Helix 6	AA6	A	163	167	Right-handed 310
Helix 7	AA7	A	168	180	Right-handed alpha
Helix 8	AA8	A	182	221	Right-handed alpha
Helix 9	AA9	A	1102	1160	Right-handed alpha
Helix 10	AB1	A	1208	1228	Right-handed alpha
Helix 11	AB2	A	1244	1263	Right-handed alpha
Helix 12	AB3	A	1276	1284	Right-handed alpha
Helix 13	AB4	A	1285	1288	Right-handed 310
Helix 14	AB5	B	39	53	Right-handed alpha
Helix 15	AB6	B	68	73	Right-handed alpha
Helix 16	AB7	B	132	145	Right-handed alpha
Helix 17	AB8	B	147	154	Right-handed alpha
Helix 18	AB9	B	158	162	Right-handed 310
Helix 19	AC1	B	163	167	Right-handed 310
Helix 20	AC2	B	168	180	Right-handed alpha
Helix 21	AC3	B	181	221	Right-handed alpha
Helix 22	AC4	B	1101	1160	Right-handed alpha
Helix 23	AC5	B	1208	1228	Right-handed alpha
Helix 24	AC6	B	1244	1264	Right-handed alpha
Helix 25	AC7	B	1276	1284	Right-handed alpha
Helix 26	AC8	B	1285	1288	Right-handed 310

There are 9 sheets in PDB entry 5DAC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	76	86	anti-parallel
Strand 4	A	92	103	anti-parallel
Strand 5	A	109	113	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	3	10	anti-parallel
Strand 3	A	76	86	anti-parallel
Strand 4	A	92	103	anti-parallel
Strand 5	A	117	122	anti-parallel
Strand 6	A	125	130	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1232	1237	first strand
Strand 2	A	1268	1273	parallel
Strand 3	A	29	33	parallel
Strand 4	A	1291	1297	parallel
Strand 5	A	1303	1309	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1167	1174	first strand
Strand 2	A	1188	1196	anti-parallel
Strand 3	A	1199	1202	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1179	1180	first strand
Strand 2	A	1184	1185	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	3	10	anti-parallel
Strand 3	B	76	86	anti-parallel
Strand 4	B	92	103	anti-parallel
Strand 5	B	109	113	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	3	10	anti-parallel
Strand 3	B	76	86	anti-parallel
Strand 4	B	92	103	anti-parallel
Strand 5	B	117	122	anti-parallel
Strand 6	B	125	130	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1232	1237	first strand
Strand 2	B	1268	1273	parallel
Strand 3	B	29	33	parallel
Strand 4	B	1291	1297	parallel
Strand 5	B	1303	1309	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1167	1179	first strand
Strand 2	B	1183	1196	anti-parallel
Strand 3	B	1199	1202	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DAC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DAC