Analysis of interatomic Contacts of Structural Units in PDB entry:
5DAI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DAI entry

There are 2 chains in PDB entry 5DAI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLU 248
B
 LYS 330PHE 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5DAI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
56 58Right-handed 310
Helix 3
AA3
A
73 81Right-handed alpha
Helix 4
AA4
A
138 150Right-handed alpha
Helix 5
AA5
A
201 209Right-handed alpha
Helix 6
AA6
B
334 338Right-handed 310
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There are 3 sheets in PDB entry 5DAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
3 8anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
98 104anti-parallel
Strand 5
A
108 114anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
47 54anti-parallel
Strand 5
A
237 243anti-parallel
Strand 6
A
227 233anti-parallel
Strand 7
A
216 221anti-parallel
Strand 8
A
132 137anti-parallel
Strand 9
A
186 191anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 180first strand
Strand 2
A
163 169anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
195 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il