Analysis of interatomic Contacts of Structural Units in PDB entry:
5DAN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DAN entry

There is 1 chain in PDB entry 5DAN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5DAN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 48Right-handed alpha
Helix 2
AA2
A
57 60Right-handed 310
Helix 3
AA3
A
61 71Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
75 79Right-handed 310
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
A
91 107Right-handed alpha
Helix 8
AA8
A
124 138Right-handed alpha
Helix 9
AA9
A
150 160Right-handed alpha
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
183 191Right-handed alpha
Helix 12
AB3
A
201 205Right-handed 310
Helix 13
AB4
A
207 221Right-handed alpha
Helix 14
AB5
A
224 235Right-handed alpha
Helix 15
AB6
A
247 257Right-handed alpha
Helix 16
AB7
A
258 260Right-handed 310
Helix 17
AB8
A
263 272Right-handed alpha
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There are 2 sheets in PDB entry 5DAN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
11 14anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
51 53parallel
Strand 3
A
80 85parallel
Strand 4
A
111 116parallel
Strand 5
A
141 147parallel
Strand 6
A
165 171parallel
Strand 7
A
194 198parallel
Strand 8
A
239 241parallel
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