Analysis of interatomic Contacts of Structural Units in PDB entry:
5DAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DAR entry

There are 6 chains in PDB entry 5DAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 1151 C 1224
B
 MET 9VAL 212
C
 ALA 1LYS 158
D
 G 1151 C 1224
E
 MET 9ASP 213
F
 ALA 1LYS 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5DAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 25Right-handed alpha
Helix 2
AA2
B
39 50Right-handed alpha
Helix 3
AA3
B
60 76Right-handed alpha
Helix 4
AA4
B
77 82Right-handed alpha
Helix 5
AA5
B
83 87Right-handed 310
Helix 6
AA6
B
99 110Right-handed alpha
Helix 7
AA7
B
174 185Right-handed alpha
Helix 8
AA8
B
206 211Right-handed alpha
Helix 9
AA9
C
20 25Right-handed alpha
Helix 10
AB1
C
30 42Right-handed alpha
Helix 11
AB2
C
71 81Right-handed alpha
Helix 12
AB3
C
98 110Right-handed alpha
Helix 13
AB4
C
117 130Right-handed alpha
Helix 14
AB5
C
140 150Right-handed alpha
Helix 15
AB6
E
10 25Right-handed alpha
Helix 16
AB7
E
39 50Right-handed alpha
Helix 17
AB8
E
60 71Right-handed alpha
Helix 18
AB9
E
83 87Right-handed 310
Helix 19
AC1
E
99 110Right-handed alpha
Helix 20
AC2
E
139 147Right-handed alpha
Helix 21
AC3
E
174 185Right-handed alpha
Helix 22
AC4
F
19 25Right-handed alpha
Helix 23
AC5
F
26 28Right-handed 310
Helix 24
AC6
F
30 42Right-handed alpha
Helix 25
AC7
F
71 81Right-handed alpha
Helix 26
AC8
F
98 109Right-handed alpha
Helix 27
AC9
F
117 130Right-handed alpha
Helix 28
AD1
F
140 150Right-handed alpha
Helix 29
AD2
F
153 158Right-handed alpha
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There are 10 sheets in PDB entry 5DAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
91 96anti-parallel
Strand 3
B
29 34anti-parallel
Strand 4
B
194 199anti-parallel
Strand 5
B
204 205anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
189 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 10first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
62 67anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
C
134 136parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 58first strand
Strand 2
E
91 96anti-parallel
Strand 3
E
29 34anti-parallel
Strand 4
E
194 199anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
111 114first strand
Strand 2
E
189 192anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 121first strand
Strand 2
E
172 173anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
131 132first strand
Strand 2
E
157 160anti-parallel
Strand 3
E
151 154anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 10first strand
Strand 2
F
49 57anti-parallel
Strand 3
F
63 67anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
96 97first strand
Strand 2
F
135 136parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il