Analysis of interatomic Contacts of Structural Units in PDB entry:
5DB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DB5 entry

There are 3 chains in PDB entry 5DB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3HIS 363
A
 ALA 365GLY 406
B
 ILE 2GLU 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5DB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed alpha
Helix 2
AA2
A
11 16Right-handed 310
Helix 3
AA3
A
36 50Right-handed alpha
Helix 4
AA4
A
59 80Right-handed alpha
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
93 110Right-handed alpha
Helix 7
AA7
A
123 126Right-handed 310
Helix 8
AA8
A
127 138Right-handed alpha
Helix 9
AA9
A
153 155Right-handed 310
Helix 10
AB1
A
156 161Right-handed alpha
Helix 11
AB2
A
182 193Right-handed alpha
Helix 12
AB3
A
211 216Right-handed alpha
Helix 13
AB4
A
239 244Right-handed alpha
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
280 298Right-handed alpha
Helix 16
AB7
A
298 317Right-handed alpha
Helix 17
AB8
A
318 320Right-handed 310
Helix 18
AB9
A
343 354Right-handed alpha
Helix 19
AC1
A
365 372Right-handed alpha
Helix 20
AC2
A
387 406Right-handed alpha
Helix 21
AC3
B
4 10Right-handed alpha
Helix 22
AC4
B
11 16Right-handed 310
Helix 23
AC5
B
36 50Right-handed alpha
Helix 24
AC6
B
59 81Right-handed alpha
Helix 25
AC7
B
84 86Right-handed 310
Helix 26
AC8
B
93 110Right-handed alpha
Helix 27
AC9
B
123 126Right-handed 310
Helix 28
AD1
B
127 138Right-handed alpha
Helix 29
AD2
B
153 155Right-handed 310
Helix 30
AD3
B
156 161Right-handed alpha
Helix 31
AD4
B
182 193Right-handed alpha
Helix 32
AD5
B
211 216Right-handed alpha
Helix 33
AD6
B
239 244Right-handed alpha
Helix 34
AD7
B
271 275Right-handed 310
Helix 35
AD8
B
280 298Right-handed alpha
Helix 36
AD9
B
298 317Right-handed alpha
Helix 37
AE1
B
318 320Right-handed 310
Helix 38
AE2
B
343 354Right-handed alpha
Helix 39
AE3
B
365 372Right-handed alpha
Helix 40
AE4
B
387 406Right-handed alpha
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There are 10 sheets in PDB entry 5DB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
22 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
356 357parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
165 171parallel
Strand 6
A
115 119parallel
Strand 7
A
140 144parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
265 267anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 326first strand
Strand 2
A
334 339anti-parallel
Strand 3
A
378 381anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
22 23anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
356 357parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
219 223anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
165 171parallel
Strand 6
B
115 119parallel
Strand 7
B
140 144parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 259first strand
Strand 2
B
265 267anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 326first strand
Strand 2
B
334 339anti-parallel
Strand 3
B
378 381anti-parallel
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