Analysis of interatomic Contacts of Structural Units in PDB entry:
5DBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DBJ entry

There are 3 chains in PDB entry 5DBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 2	GLY 438
A	SER 2	GLY 438
B	SER 2	PHE 385

There are 97 helices in PDB entry 5DBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	14	27	Right-handed alpha
Helix 2	AA2	E	49	51	Right-handed 310
Helix 3	AA3	E	52	59	Right-handed alpha
Helix 4	AA4	E	61	67	Right-handed alpha
Helix 5	AA5	E	87	91	Right-handed 310
Helix 6	AA6	E	106	108	Right-handed 310
Helix 7	AA7	E	122	137	Right-handed alpha
Helix 8	AA8	E	184	190	Right-handed alpha
Helix 9	AA9	E	212	216	Right-handed 310
Helix 10	AB1	E	256	263	Right-handed alpha
Helix 11	AB2	E	265	275	Right-handed alpha
Helix 12	AB3	E	277	287	Right-handed alpha
Helix 13	AB4	E	315	318	Right-handed 310
Helix 14	AB5	E	327	350	Right-handed alpha
Helix 15	AB6	E	353	356	Right-handed 310
Helix 16	AB7	E	357	382	Right-handed alpha
Helix 17	AB8	E	384	391	Right-handed alpha
Helix 18	AB9	E	391	403	Right-handed alpha
Helix 19	AC1	E	413	428	Right-handed alpha
Helix 20	AC2	E	433	437	Right-handed 310
Helix 21	AC3	A	14	27	Right-handed alpha
Helix 22	AC4	A	49	51	Right-handed 310
Helix 23	AC5	A	52	59	Right-handed alpha
Helix 24	AC6	A	61	67	Right-handed alpha
Helix 25	AC7	A	87	91	Right-handed 310
Helix 26	AC8	A	106	108	Right-handed 310
Helix 27	AC9	A	122	137	Right-handed alpha
Helix 28	AD1	A	184	190	Right-handed alpha
Helix 29	AD2	A	212	216	Right-handed 310
Helix 30	AD3	A	219	223	Right-handed 310
Helix 31	AD4	A	256	263	Right-handed alpha
Helix 32	AD5	A	265	276	Right-handed alpha
Helix 33	AD6	A	277	287	Right-handed alpha
Helix 34	AD7	A	315	318	Right-handed 310
Helix 35	AD8	A	327	350	Right-handed alpha
Helix 36	AD9	A	353	356	Right-handed 310
Helix 37	AE1	A	357	382	Right-handed alpha
Helix 38	AE2	A	384	391	Right-handed alpha
Helix 39	AE3	A	394	404	Right-handed alpha
Helix 40	AE4	A	413	428	Right-handed alpha
Helix 41	AE5	A	433	437	Right-handed 310
Helix 42	AE6	B	14	27	Right-handed alpha
Helix 43	AE7	B	52	60	Right-handed alpha
Helix 44	AE8	B	61	68	Right-handed alpha
Helix 45	AE9	B	106	108	Right-handed 310
Helix 46	AF1	B	122	138	Right-handed alpha
Helix 47	AF2	B	184	190	Right-handed alpha
Helix 48	AF3	B	212	216	Right-handed 310
Helix 49	AF4	B	256	263	Right-handed alpha
Helix 50	AF5	B	265	275	Right-handed alpha
Helix 51	AF6	B	277	287	Right-handed alpha
Helix 52	AF7	B	315	318	Right-handed 310
Helix 53	AF8	B	327	350	Right-handed alpha
Helix 54	AF9	B	354	356	Right-handed 310
Helix 55	AG1	B	357	382	Right-handed alpha
Helix 56	AG2	B	384	391	Right-handed alpha
Helix 57	AG3	B	391	404	Right-handed alpha
Helix 58	AG4	B	414	428	Right-handed alpha
Helix 59	AG5	B	431	437	Right-handed 310
Helix 60	AG6	C	14	27	Right-handed alpha
Helix 61	AG7	C	52	59	Right-handed alpha
Helix 62	AG8	C	61	68	Right-handed alpha
Helix 63	AG9	C	87	91	Right-handed 310
Helix 64	AH1	C	106	108	Right-handed 310
Helix 65	AH2	C	122	137	Right-handed alpha
Helix 66	AH3	C	184	190	Right-handed alpha
Helix 67	AH4	C	212	216	Right-handed 310
Helix 68	AH5	C	256	263	Right-handed alpha
Helix 69	AH6	C	265	276	Right-handed alpha
Helix 70	AH7	C	277	287	Right-handed alpha
Helix 71	AH8	C	315	318	Right-handed 310
Helix 72	AH9	C	327	349	Right-handed alpha
Helix 73	AI1	C	353	356	Right-handed 310
Helix 74	AI2	C	357	382	Right-handed alpha
Helix 75	AI3	C	384	391	Right-handed alpha
Helix 76	AI4	C	391	403	Right-handed alpha
Helix 77	AI5	C	413	428	Right-handed alpha
Helix 78	AI6	C	433	437	Right-handed 310
Helix 79	AI7	D	14	27	Right-handed alpha
Helix 80	AI8	D	51	60	Right-handed alpha
Helix 81	AI9	D	61	68	Right-handed alpha
Helix 82	AJ1	D	87	91	Right-handed 310
Helix 83	AJ2	D	106	108	Right-handed 310
Helix 84	AJ3	D	122	137	Right-handed alpha
Helix 85	AJ4	D	184	190	Right-handed alpha
Helix 86	AJ5	D	212	216	Right-handed 310
Helix 87	AJ6	D	256	263	Right-handed alpha
Helix 88	AJ7	D	265	275	Right-handed alpha
Helix 89	AJ8	D	277	287	Right-handed alpha
Helix 90	AJ9	D	314	319	Right-handed alpha
Helix 91	AK1	D	327	350	Right-handed alpha
Helix 92	AK2	D	353	356	Right-handed 310
Helix 93	AK3	D	357	382	Right-handed alpha
Helix 94	AK4	D	384	391	Right-handed alpha
Helix 95	AK5	D	391	403	Right-handed alpha
Helix 96	AK6	D	413	428	Right-handed alpha
Helix 97	AK7	D	433	437	Right-handed 310

There are 30 sheets in PDB entry 5DBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	143	first strand
Strand 2	E	31	35	parallel
Strand 3	E	6	11	parallel
Strand 4	E	168	178	parallel
Strand 5	E	157	163	anti-parallel
Strand 6	E	146	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	143	first strand
Strand 2	E	31	35	parallel
Strand 3	E	6	11	parallel
Strand 4	E	168	178	parallel
Strand 5	E	311	313	parallel
Strand 6	E	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	118	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	75	80	anti-parallel
Strand 3	E	226	230	parallel
Strand 4	E	237	242	anti-parallel
Strand 5	E	248	255	anti-parallel
Strand 6	E	201	209	anti-parallel
Strand 7	E	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	75	80	anti-parallel
Strand 3	E	226	230	parallel
Strand 4	E	237	242	anti-parallel
Strand 5	E	248	255	anti-parallel
Strand 6	E	201	209	anti-parallel
Strand 7	E	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	195	first strand
Strand 2	E	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	31	35	parallel
Strand 3	A	6	11	parallel
Strand 4	A	168	178	parallel
Strand 5	A	157	163	anti-parallel
Strand 6	A	146	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	31	35	parallel
Strand 3	A	6	11	parallel
Strand 4	A	168	178	parallel
Strand 5	A	311	313	parallel
Strand 6	A	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	118	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	226	230	parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	248	255	anti-parallel
Strand 6	A	201	209	anti-parallel
Strand 7	A	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	226	230	parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	248	255	anti-parallel
Strand 6	A	201	209	anti-parallel
Strand 7	A	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	167	178	parallel
Strand 5	B	157	164	anti-parallel
Strand 6	B	146	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	167	178	parallel
Strand 5	B	311	313	parallel
Strand 6	B	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	118	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	226	230	parallel
Strand 4	B	237	242	anti-parallel
Strand 5	B	247	255	anti-parallel
Strand 6	B	201	209	anti-parallel
Strand 7	B	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	226	230	parallel
Strand 4	B	237	242	anti-parallel
Strand 5	B	247	255	anti-parallel
Strand 6	B	201	209	anti-parallel
Strand 7	B	294	297	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	195	first strand
Strand 2	B	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	11	parallel
Strand 4	C	168	178	parallel
Strand 5	C	157	163	anti-parallel
Strand 6	C	146	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	11	parallel
Strand 4	C	168	178	parallel
Strand 5	C	311	313	parallel
Strand 6	C	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	118	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	75	79	anti-parallel
Strand 3	C	226	230	parallel
Strand 4	C	237	242	anti-parallel
Strand 5	C	248	255	anti-parallel
Strand 6	C	201	209	anti-parallel
Strand 7	C	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	75	79	anti-parallel
Strand 3	C	226	230	parallel
Strand 4	C	237	242	anti-parallel
Strand 5	C	248	255	anti-parallel
Strand 6	C	201	209	anti-parallel
Strand 7	C	294	297	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	195	first strand
Strand 2	C	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	11	parallel
Strand 4	D	168	178	parallel
Strand 5	D	157	163	anti-parallel
Strand 6	D	146	154	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	11	parallel
Strand 4	D	168	178	parallel
Strand 5	D	311	313	parallel
Strand 6	D	307	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	118	119	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	75	79	anti-parallel
Strand 3	D	226	230	parallel
Strand 4	D	237	242	anti-parallel
Strand 5	D	247	255	anti-parallel
Strand 6	D	201	209	anti-parallel
Strand 7	D	288	289	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	75	79	anti-parallel
Strand 3	D	226	230	parallel
Strand 4	D	237	242	anti-parallel
Strand 5	D	247	255	anti-parallel
Strand 6	D	201	209	anti-parallel
Strand 7	D	294	296	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	195	first strand
Strand 2	D	301	303	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DBJ