Analysis of interatomic Contacts of Structural Units in PDB entry:
5DBO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DBO entry

There are 4 chains in PDB entry 5DBO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 127PHE 443
B
 PRO 10TYR 406
C
 LYS 127ILE 441
D
 PRO 10TYR 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5DBO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
134 138Right-handed 310
Helix 2
AA2
A
156 168Right-handed alpha
Helix 3
AA3
A
173 192Right-handed alpha
Helix 4
AA4
A
199 208Right-handed alpha
Helix 5
AA5
A
208 220Right-handed alpha
Helix 6
AA6
A
223 239Right-handed alpha
Helix 7
AA7
A
245 265Right-handed alpha
Helix 8
AA8
A
265 280Right-handed alpha
Helix 9
AA9
A
292 305Right-handed alpha
Helix 10
AB1
A
321 333Right-handed alpha
Helix 11
AB2
A
344 349Right-handed alpha
Helix 12
AB3
A
373 385Right-handed alpha
Helix 13
AB4
A
393 397Right-handed 310
Helix 14
AB5
A
430 434Right-handed 310
Helix 15
AB6
B
11 22Right-handed alpha
Helix 16
AB7
B
23 37Right-handed alpha
Helix 17
AB8
B
42 60Right-handed alpha
Helix 18
AB9
B
64 83Right-handed alpha
Helix 19
AC1
B
87 103Right-handed alpha
Helix 20
AC2
B
181 209Right-handed alpha
Helix 21
AC3
B
210 215Right-handed alpha
Helix 22
AC4
B
227 241Right-handed alpha
Helix 23
AC5
B
262 272Right-handed alpha
Helix 24
AC6
B
287 291Right-handed 310
Helix 25
AC7
B
312 323Right-handed alpha
Helix 26
AC8
B
332 336Right-handed 310
Helix 27
AC9
B
342 348Right-handed alpha
Helix 28
AD1
B
379 383Right-handed 310
Helix 29
AD2
B
394 406Right-handed alpha
Helix 30
AD3
C
134 138Right-handed 310
Helix 31
AD4
C
156 168Right-handed alpha
Helix 32
AD5
C
173 192Right-handed alpha
Helix 33
AD6
C
199 208Right-handed alpha
Helix 34
AD7
C
208 220Right-handed alpha
Helix 35
AD8
C
223 240Right-handed alpha
Helix 36
AD9
C
245 265Right-handed alpha
Helix 37
AE1
C
265 280Right-handed alpha
Helix 38
AE2
C
292 305Right-handed alpha
Helix 39
AE3
C
321 332Right-handed alpha
Helix 40
AE4
C
344 349Right-handed alpha
Helix 41
AE5
C
373 385Right-handed alpha
Helix 42
AE6
C
393 395Right-handed 310
Helix 43
AE7
C
430 434Right-handed 310
Helix 44
AE8
D
12 19Right-handed alpha
Helix 45
AE9
D
23 38Right-handed alpha
Helix 46
AF1
D
41 60Right-handed alpha
Helix 47
AF2
D
64 83Right-handed alpha
Helix 48
AF3
D
87 107Right-handed alpha
Helix 49
AF4
D
182 209Right-handed alpha
Helix 50
AF5
D
210 215Right-handed alpha
Helix 51
AF6
D
227 241Right-handed alpha
Helix 52
AF7
D
262 272Right-handed alpha
Helix 53
AF8
D
287 291Right-handed 310
Helix 54
AF9
D
312 323Right-handed alpha
Helix 55
AG1
D
332 336Right-handed 310
Helix 56
AG2
D
342 348Right-handed alpha
Helix 57
AG3
D
379 383Right-handed 310
Helix 58
AG4
D
394 406Right-handed alpha
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There are 8 sheets in PDB entry 5DBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
310 314parallel
Strand 3
A
285 289parallel
Strand 4
A
354 358parallel
Strand 5
A
387 391parallel
Strand 6
A
436 438parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
368 371anti-parallel
Strand 3
A
426 429anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 279first strand
Strand 2
B
244 248parallel
Strand 3
B
220 224parallel
Strand 4
B
293 297parallel
Strand 5
B
327 330parallel
Strand 6
B
385 387parallel
Strand 7
B
392 393anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
307 310anti-parallel
Strand 3
B
375 378anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
336 339first strand
Strand 2
C
310 314parallel
Strand 3
C
285 289parallel
Strand 4
C
354 358parallel
Strand 5
C
387 391parallel
Strand 6
C
436 438parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
397 398first strand
Strand 2
C
361 363parallel
Strand 3
C
368 371anti-parallel
Strand 4
C
426 429anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 279first strand
Strand 2
D
244 248parallel
Strand 3
D
220 224parallel
Strand 4
D
293 297parallel
Strand 5
D
327 330parallel
Strand 6
D
385 388parallel
Strand 7
D
391 393anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 301first strand
Strand 2
D
307 310anti-parallel
Strand 3
D
375 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il