Analysis of interatomic Contacts of Structural Units in PDB entry:
5DBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DBV entry

There is 1 chain in PDB entry 5DBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29ARG 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5DBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 50Right-handed alpha
Helix 2
AA2
A
53 71Right-handed alpha
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
87 102Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
138 153Right-handed alpha
Helix 7
AA7
A
165 183Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
218 226Right-handed alpha
Helix 10
AB1
A
249 263Right-handed alpha
Helix 11
AB2
A
264 267Right-handed 310
Helix 12
AB3
A
279 293Right-handed alpha
Helix 13
AB4
A
299 310Right-handed alpha
Helix 14
AB5
A
324 332Right-handed alpha
Helix 15
AB6
A
351 356Right-handed alpha
Helix 16
AB7
A
370 383Right-handed alpha
Helix 17
AB8
A
395 407Right-handed alpha
Helix 18
AB9
A
416 422Right-handed 310
Helix 19
AC1
A
443 446Right-handed 310
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There are 5 sheets in PDB entry 5DBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
190 193parallel
Strand 3
A
156 160parallel
Strand 4
A
129 133parallel
Strand 5
A
212 215parallel
Strand 6
A
231 234parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
448 456anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
342 346parallel
Strand 3
A
362 368parallel
Strand 4
A
274 278parallel
Strand 5
A
241 244parallel
Strand 6
A
388 392parallel
Strand 7
A
410 413parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
315 316anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 434first strand
Strand 2
A
440 441anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il