Analysis of interatomic Contacts of Structural Units in PDB entry:
5DBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DBX entry

There are 10 chains in PDB entry 5DBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 65ILE 70
A
 ARG 72GLN 127
A
 SER 129PRO 248
A
 TRP 250LYS 345
A
 LYS 347ARG 365
B
 ALA 65ILE 70
B
 ARG 72GLN 127
B
 SER 129PRO 248
B
 TRP 250LYS 345
B
 LYS 347THR 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5DBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 73Right-handed 310
Helix 2
AA2
A
109 111Right-handed 310
Helix 3
AA3
A
113 124Right-handed alpha
Helix 4
AA4
A
158 168Right-handed alpha
Helix 5
AA5
A
177 198Right-handed alpha
Helix 6
AA6
A
206 208Right-handed 310
Helix 7
AA7
A
223 229Right-handed alpha
Helix 8
AA8
A
247 251Right-handed 310
Helix 9
AA9
A
252 261Right-handed alpha
Helix 10
AB1
A
264 281Right-handed alpha
Helix 11
AB2
A
289 300Right-handed alpha
Helix 12
AB3
A
311 316Right-handed 310
Helix 13
AB4
A
319 330Right-handed alpha
Helix 14
AB5
A
339 344Right-handed alpha
Helix 15
AB6
A
345 352Right-handed 310
Helix 16
AB7
A
354 362Right-handed alpha
Helix 17
AB8
B
116 126Right-handed alpha
Helix 18
AB9
B
157 168Right-handed alpha
Helix 19
AC1
B
177 198Right-handed alpha
Helix 20
AC2
B
206 208Right-handed 310
Helix 21
AC3
B
223 232Right-handed alpha
Helix 22
AC4
B
247 251Right-handed 310
Helix 23
AC5
B
252 261Right-handed alpha
Helix 24
AC6
B
264 281Right-handed alpha
Helix 25
AC7
B
289 300Right-handed alpha
Helix 26
AC8
B
312 316Right-handed 310
Helix 27
AC9
B
319 330Right-handed alpha
Helix 28
AD1
B
333 337Right-handed 310
Helix 29
AD2
B
339 344Right-handed alpha
Helix 30
AD3
B
345 346Right-handed 310
Helix 31
AD4
B
347 352Right-handed 310
Helix 32
AD5
B
354 362Right-handed alpha
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There are 4 sheets in PDB entry 5DBX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
88 94anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
145 151anti-parallel
Strand 5
A
138 142anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
218 220anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 83first strand
Strand 2
B
87 94anti-parallel
Strand 3
B
99 107anti-parallel
Strand 4
B
145 151anti-parallel
Strand 5
B
138 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
218 220anti-parallel
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