Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCA entry

There are 2 chains in PDB entry 5DCA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 113LYS 2163
J
 SER 2148LEU 2398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 5DCA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 131Right-handed alpha
Helix 2
AA2
A
136 150Right-handed alpha
Helix 3
AA3
A
163 170Right-handed alpha
Helix 4
AA4
A
175 187Right-handed alpha
Helix 5
AA5
A
291 301Right-handed alpha
Helix 6
AA6
A
305 320Right-handed alpha
Helix 7
AA7
A
329 339Right-handed alpha
Helix 8
AA8
A
346 351Right-handed alpha
Helix 9
AA9
A
352 359Right-handed alpha
Helix 10
AB1
A
369 378Right-handed alpha
Helix 11
AB2
A
387 393Right-handed alpha
Helix 12
AB3
A
428 433Right-handed alpha
Helix 13
AB4
A
479 483Right-handed 310
Helix 14
AB5
A
484 491Right-handed 310
Helix 15
AB6
A
500 512Right-handed alpha
Helix 16
AB7
A
526 541Right-handed alpha
Helix 17
AB8
A
563 578Right-handed alpha
Helix 18
AB9
A
595 602Right-handed alpha
Helix 19
AC1
A
608 618Right-handed alpha
Helix 20
AC2
A
621 626Right-handed alpha
Helix 21
AC3
A
635 641Right-handed 310
Helix 22
AC4
A
643 657Right-handed alpha
Helix 23
AC5
A
676 684Right-handed alpha
Helix 24
AC6
A
687 689Right-handed 310
Helix 25
AC7
A
695 699Right-handed 310
Helix 26
AC8
A
714 736Right-handed alpha
Helix 27
AC9
A
746 763Right-handed alpha
Helix 28
AD1
A
775 786Right-handed alpha
Helix 29
AD2
A
790 799Right-handed alpha
Helix 30
AD3
A
809 822Right-handed alpha
Helix 31
AD4
A
832 837Right-handed alpha
Helix 32
AD5
A
855 858Right-handed 310
Helix 33
AD6
A
864 874Right-handed alpha
Helix 34
AD7
A
894 902Right-handed alpha
Helix 35
AD8
A
911 914Right-handed 310
Helix 36
AD9
A
915 926Right-handed alpha
Helix 37
AE1
A
931 940Right-handed alpha
Helix 38
AE2
A
942 951Right-handed alpha
Helix 39
AE3
A
959 964Right-handed alpha
Helix 40
AE4
A
966 984Right-handed alpha
Helix 41
AE5
A
999 1009Right-handed alpha
Helix 42
AE6
A
1011 1022Right-handed alpha
Helix 43
AE7
A
1027 1037Right-handed alpha
Helix 44
AE8
A
1038 1042Right-handed 310
Helix 45
AE9
A
1050 1060Right-handed alpha
Helix 46
AF1
A
1071 1085Right-handed alpha
Helix 47
AF2
A
1091 1120Right-handed alpha
Helix 48
AF3
A
1121 1138Right-handed alpha
Helix 49
AF4
A
1144 1149Right-handed 310
Helix 50
AF5
A
1153 1164Right-handed alpha
Helix 51
AF6
A
1167 1172Right-handed alpha
Helix 52
AF7
A
1177 1183Right-handed alpha
Helix 53
AF8
A
1190 1197Right-handed alpha
Helix 54
AF9
A
1229 1234Right-handed alpha
Helix 55
AG1
A
1277 1283Right-handed alpha
Helix 56
AG2
A
1330 1334Right-handed 310
Helix 57
AG3
A
1336 1341Right-handed alpha
Helix 58
AG4
A
1349 1355Right-handed alpha
Helix 59
AG5
A
1355 1361Right-handed alpha
Helix 60
AG6
A
1375 1390Right-handed alpha
Helix 61
AG7
A
1401 1417Right-handed alpha
Helix 62
AG8
A
1431 1442Right-handed alpha
Helix 63
AG9
A
1448 1456Right-handed alpha
Helix 64
AH1
A
1457 1461Right-handed 310
Helix 65
AH2
A
1462 1467Right-handed alpha
Helix 66
AH3
A
1476 1480Right-handed 310
Helix 67
AH4
A
1481 1503Right-handed alpha
Helix 68
AH5
A
1518 1526Right-handed alpha
Helix 69
AH6
A
1528 1530Right-handed 310
Helix 70
AH7
A
1560 1577Right-handed alpha
Helix 71
AH8
A
1587 1604Right-handed alpha
Helix 72
AH9
A
1613 1623Right-handed alpha
Helix 73
AI1
A
1626 1628Right-handed 310
Helix 74
AI2
A
1629 1635Right-handed alpha
Helix 75
AI3
A
1645 1658Right-handed alpha
Helix 76
AI4
A
1669 1671Right-handed 310
Helix 77
AI5
A
1699 1708Right-handed alpha
Helix 78
AI6
A
1726 1738Right-handed alpha
Helix 79
AI7
A
1745 1748Right-handed 310
Helix 80
AI8
A
1749 1760Right-handed alpha
Helix 81
AI9
A
1765 1774Right-handed alpha
Helix 82
AJ1
A
1776 1783Right-handed alpha
Helix 83
AJ2
A
1785 1790Right-handed 310
Helix 84
AJ3
A
1795 1817Right-handed alpha
Helix 85
AJ4
A
1847 1857Right-handed alpha
Helix 86
AJ5
A
1859 1870Right-handed alpha
Helix 87
AJ6
A
1875 1885Right-handed alpha
Helix 88
AJ7
A
1886 1892Right-handed 310
Helix 89
AJ8
A
1897 1907Right-handed alpha
Helix 90
AJ9
A
1921 1936Right-handed alpha
Helix 91
AK1
A
1940 1968Right-handed alpha
Helix 92
AK2
A
1972 1986Right-handed alpha
Helix 93
AK3
A
2001 2011Right-handed alpha
Helix 94
AK4
A
2015 2021Right-handed alpha
Helix 95
AK5
A
2023 2031Right-handed alpha
Helix 96
AK6
A
2034 2048Right-handed alpha
Helix 97
AK7
J
2151 2160Right-handed alpha
Helix 98
AK8
J
2161 2167Right-handed 310
Helix 99
AK9
J
2187 2196Right-handed alpha
Helix 100
AL1
J
2270 2282Right-handed alpha
Helix 101
AL2
J
2308 2318Right-handed alpha
Helix 102
AL3
J
2362 2366Right-handed 310
Helix 103
AL4
J
2384 2387Right-handed 310
Helix 104
AL5
J
2388 2397Right-handed alpha
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There are 15 sheets in PDB entry 5DCA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
1544 1551anti-parallel
Strand 3
A
1718 1725parallel
Strand 4
A
1679 1683parallel
Strand 5
A
1581 1585parallel
Strand 6
A
1663 1667parallel
Strand 7
A
1637 1640parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
703 710anti-parallel
Strand 4
A
884 891parallel
Strand 5
A
844 848parallel
Strand 6
A
740 743parallel
Strand 7
A
827 830parallel
Strand 8
A
801 804parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
604 607parallel
Strand 3
A
556 560parallel
Strand 4
A
628 633parallel
Strand 5
A
666 672parallel
Strand 6
A
517 521parallel
Strand 7
A
691 693parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 854first strand
Strand 2
A
859 862anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
987 990first strand
Strand 2
A
995 998anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1202 1210first strand
Strand 2
A
1215 1224anti-parallel
Strand 3
A
1267 1275anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1251 1259first strand
Strand 2
A
1237 1244anti-parallel
Strand 3
A
1287 1294anti-parallel
Strand 4
A
1301 1307anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1424 1426first strand
Strand 2
A
1444 1447parallel
Strand 3
A
1395 1398parallel
Strand 4
A
1470 1474parallel
Strand 5
A
1507 1512parallel
Strand 6
A
1366 1369parallel
Strand 7
A
1532 1534parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1686 1689first strand
Strand 2
A
1694 1697anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1820 1823first strand
Strand 2
A
1843 1846anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2052 2057first strand
Strand 2
A
2068 2076anti-parallel
Strand 3
A
2123 2131anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2110 2117first strand
Strand 2
A
2099 2105anti-parallel
Strand 3
A
2136 2146anti-parallel
Strand 4
A
2154 2162anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
2169 2171first strand
Strand 2
J
2299 2307parallel
Strand 3
J
2289 2296anti-parallel
Strand 4
J
2254 2262parallel
Strand 5
J
2204 2211anti-parallel
Strand 6
J
2218 2225anti-parallel
Strand 7
J
2348 2352parallel
Strand 8
J
2374 2376anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
2169 2171first strand
Strand 2
J
2299 2307parallel
Strand 3
J
2334 2342anti-parallel
Strand 4
J
2182 2186parallel
Strand 5
J
2218 2225parallel
Strand 6
J
2348 2352parallel
Strand 7
J
2374 2376anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
2229 2232first strand
Strand 2
J
2235 2238anti-parallel
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