Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCM entry

There are 2 chains in PDB entry 5DCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 128ASN 224
B
 GLN 127PRO 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5DCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 165Right-handed alpha
Helix 2
AA2
A
172 182Right-handed alpha
Helix 3
AA3
A
187 203Right-handed alpha
Helix 4
AA4
A
204 206Right-handed 310
Helix 5
AA5
B
152 164Right-handed alpha
Helix 6
AA6
B
172 181Right-handed alpha
Helix 7
AA7
B
187 203Right-handed alpha
Helix 8
AA8
B
204 206Right-handed 310
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There are 4 sheets in PDB entry 5DCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
134 136anti-parallel
Strand 3
A
141 144anti-parallel
Strand 4
A
147 150anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
210 213anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
134 136anti-parallel
Strand 3
B
141 143anti-parallel
Strand 4
B
148 150anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
217 220anti-parallel
Strand 3
B
210 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il