Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCP entry

There are 2 chains in PDB entry 5DCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1744ASP 1911
B
 PHE 1744ASP 1910
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 5DCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1828 1831Right-handed 310
Helix 2
AA2
B
1828 1831Right-handed 310
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There are 11 sheets in PDB entry 5DCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1747 1751first strand
Strand 2
A
1783 1788anti-parallel
Strand 3
A
1775 1779anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1771 1772first strand
Strand 2
A
1760 1765anti-parallel
Strand 3
A
1794 1802anti-parallel
Strand 4
A
1805 1806anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1771 1772first strand
Strand 2
A
1760 1765anti-parallel
Strand 3
A
1794 1802anti-parallel
Strand 4
A
1812 1816anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1825 1827first strand
Strand 2
A
1840 1845anti-parallel
Strand 3
A
1875 1880anti-parallel
Strand 4
A
1868 1870anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1833 1835first strand
Strand 2
A
1904 1909parallel
Strand 3
A
1886 1893anti-parallel
Strand 4
A
1855 1859anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1747 1751first strand
Strand 2
B
1783 1788anti-parallel
Strand 3
B
1775 1779anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1771 1772first strand
Strand 2
B
1760 1765anti-parallel
Strand 3
B
1794 1802anti-parallel
Strand 4
B
1805 1806anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1771 1772first strand
Strand 2
B
1760 1765anti-parallel
Strand 3
B
1794 1802anti-parallel
Strand 4
B
1812 1816anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1825 1827first strand
Strand 2
B
1840 1845anti-parallel
Strand 3
B
1876 1880anti-parallel
Strand 4
B
1868 1870anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1833 1835first strand
Strand 2
B
1904 1909parallel
Strand 3
B
1886 1894anti-parallel
Strand 4
B
1854 1859anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1833 1835first strand
Strand 2
B
1904 1909parallel
Strand 3
B
1886 1894anti-parallel
Strand 4
B
1897 1898anti-parallel
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