Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCW entry

There is 1 chain in PDB entry 5DCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 28PHE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5DCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 49Right-handed alpha
Helix 2
AA2
A
70 75Right-handed alpha
Helix 3
AA3
A
87 96Right-handed alpha
Helix 4
AA4
A
116 130Right-handed alpha
Helix 5
AA5
A
147 151Right-handed 310
Helix 6
AA6
A
176 192Right-handed alpha
Helix 7
AA7
A
214 229Right-handed alpha
Helix 8
AA8
A
238 244Right-handed alpha
Helix 9
AA9
A
251 264Right-handed alpha
Helix 10
AB1
A
265 268Right-handed 310
Helix 11
AB2
A
281 294Right-handed alpha
Helix 12
AB3
A
308 314Right-handed alpha
Helix 13
AB4
A
316 327Right-handed alpha
Helix 14
AB5
A
333 338Right-handed alpha
Helix 15
AB6
A
339 347Right-handed alpha
Helix 16
AB7
A
356 362Right-handed alpha
Helix 17
AB8
A
369 384Right-handed alpha
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There are 3 sheets in PDB entry 5DCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
59 65parallel
Strand 3
A
30 35parallel
Strand 4
A
103 106parallel
Strand 5
A
138 142parallel
Strand 6
A
195 201parallel
Strand 7
A
270 274parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
249 250parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
297 298parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il