Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DCX entry

There are 7 chains in PDB entry 5DCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	PRO 214
B	HIS 0	PRO 209
C	MET 1	GLN 202
D	MET 1	ASN 208
E	MET 1	GLN 200
F	MET 1	LEU 193
G	MET 1	GLU 32

There are 89 helices in PDB entry 5DCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	23	33	Right-handed alpha
Helix 3	AA3	A	44	48	Right-handed 310
Helix 4	AA4	A	49	72	Right-handed alpha
Helix 5	AA5	A	101	120	Right-handed alpha
Helix 6	AA6	A	151	157	Right-handed alpha
Helix 7	AA7	A	172	176	Right-handed 310
Helix 8	AA8	A	181	206	Right-handed alpha
Helix 9	AA9	B	14	19	Right-handed alpha
Helix 10	AB1	B	23	33	Right-handed alpha
Helix 11	AB2	B	44	48	Right-handed 310
Helix 12	AB3	B	49	72	Right-handed alpha
Helix 13	AB4	B	101	120	Right-handed alpha
Helix 14	AB5	B	151	157	Right-handed alpha
Helix 15	AB6	B	172	176	Right-handed 310
Helix 16	AB7	B	181	206	Right-handed alpha
Helix 17	AB8	C	14	19	Right-handed alpha
Helix 18	AB9	C	23	33	Right-handed alpha
Helix 19	AC1	C	44	48	Right-handed 310
Helix 20	AC2	C	49	72	Right-handed alpha
Helix 21	AC3	C	101	120	Right-handed alpha
Helix 22	AC4	C	151	157	Right-handed alpha
Helix 23	AC5	C	172	177	Right-handed alpha
Helix 24	AC6	C	181	202	Right-handed alpha
Helix 25	AC7	D	14	19	Right-handed alpha
Helix 26	AC8	D	23	33	Right-handed alpha
Helix 27	AC9	D	44	48	Right-handed 310
Helix 28	AD1	D	49	72	Right-handed alpha
Helix 29	AD2	D	101	120	Right-handed alpha
Helix 30	AD3	D	151	157	Right-handed alpha
Helix 31	AD4	D	172	176	Right-handed 310
Helix 32	AD5	D	181	207	Right-handed alpha
Helix 33	AD6	E	14	19	Right-handed alpha
Helix 34	AD7	E	23	33	Right-handed alpha
Helix 35	AD8	E	44	48	Right-handed 310
Helix 36	AD9	E	49	72	Right-handed alpha
Helix 37	AE1	E	101	120	Right-handed alpha
Helix 38	AE2	E	151	157	Right-handed alpha
Helix 39	AE3	E	172	176	Right-handed 310
Helix 40	AE4	E	181	198	Right-handed alpha
Helix 41	AE5	F	14	19	Right-handed alpha
Helix 42	AE6	F	23	33	Right-handed alpha
Helix 43	AE7	F	44	48	Right-handed 310
Helix 44	AE8	F	49	72	Right-handed alpha
Helix 45	AE9	F	101	103	Right-handed 310
Helix 46	AF1	F	104	122	Right-handed alpha
Helix 47	AF2	F	151	157	Right-handed alpha
Helix 48	AF3	F	172	176	Right-handed 310
Helix 49	AF4	F	181	193	Right-handed alpha
Helix 50	AF5	G	14	19	Right-handed alpha
Helix 51	AF6	G	23	33	Right-handed alpha
Helix 52	AF7	G	44	48	Right-handed 310
Helix 53	AF8	G	49	72	Right-handed alpha
Helix 54	AF9	G	101	119	Right-handed alpha
Helix 55	AG1	G	151	156	Right-handed alpha
Helix 56	AG2	G	172	176	Right-handed 310
Helix 57	AG3	G	181	203	Right-handed alpha
Helix 58	AG4	H	14	19	Right-handed alpha
Helix 59	AG5	H	23	33	Right-handed alpha
Helix 60	AG6	H	44	48	Right-handed 310
Helix 61	AG7	H	49	72	Right-handed alpha
Helix 62	AG8	H	101	120	Right-handed alpha
Helix 63	AG9	H	151	157	Right-handed alpha
Helix 64	AH1	H	172	176	Right-handed 310
Helix 65	AH2	H	181	207	Right-handed alpha
Helix 66	AH3	I	14	19	Right-handed alpha
Helix 67	AH4	I	23	33	Right-handed alpha
Helix 68	AH5	I	44	48	Right-handed 310
Helix 69	AH6	I	49	72	Right-handed alpha
Helix 70	AH7	I	101	103	Right-handed 310
Helix 71	AH8	I	104	120	Right-handed alpha
Helix 72	AH9	I	151	157	Right-handed alpha
Helix 73	AI1	I	172	176	Right-handed 310
Helix 74	AI2	I	181	194	Right-handed alpha
Helix 75	AI3	J	14	19	Right-handed alpha
Helix 76	AI4	J	23	33	Right-handed alpha
Helix 77	AI5	J	44	48	Right-handed 310
Helix 78	AI6	J	49	72	Right-handed alpha
Helix 79	AI7	J	101	103	Right-handed 310
Helix 80	AI8	J	104	120	Right-handed alpha
Helix 81	AI9	J	149	153	Right-handed 310
Helix 82	AJ1	J	172	176	Right-handed 310
Helix 83	AJ2	J	181	191	Right-handed alpha
Helix 84	AJ3	K	23	33	Right-handed alpha
Helix 85	AJ4	K	44	48	Right-handed 310
Helix 86	AJ5	K	49	72	Right-handed alpha
Helix 87	AJ6	K	101	121	Right-handed alpha
Helix 88	AJ7	K	151	157	Right-handed alpha
Helix 89	AJ8	K	181	194	Right-handed alpha

There are 21 sheets in PDB entry 5DCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	4	11	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	78	84	anti-parallel
Strand 5	A	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	4	11	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	78	84	anti-parallel
Strand 5	B	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	4	11	anti-parallel
Strand 3	C	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	4	11	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	78	84	anti-parallel
Strand 5	C	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	144	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	4	11	anti-parallel
Strand 3	D	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	4	11	anti-parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	78	84	anti-parallel
Strand 5	D	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	4	11	anti-parallel
Strand 3	E	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	4	11	anti-parallel
Strand 3	E	89	96	anti-parallel
Strand 4	E	78	84	anti-parallel
Strand 5	E	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	4	11	anti-parallel
Strand 3	F	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	4	11	anti-parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	78	84	anti-parallel
Strand 5	F	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	134	first strand
Strand 2	G	4	11	anti-parallel
Strand 3	G	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	134	first strand
Strand 2	G	4	11	anti-parallel
Strand 3	G	89	96	anti-parallel
Strand 4	G	78	84	anti-parallel
Strand 5	G	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	137	first strand
Strand 2	G	144	145	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	134	first strand
Strand 2	H	4	11	anti-parallel
Strand 3	H	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	134	first strand
Strand 2	H	4	11	anti-parallel
Strand 3	H	89	96	anti-parallel
Strand 4	H	78	84	anti-parallel
Strand 5	H	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	134	first strand
Strand 2	I	4	11	anti-parallel
Strand 3	I	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	134	first strand
Strand 2	I	4	11	anti-parallel
Strand 3	I	89	96	anti-parallel
Strand 4	I	78	84	anti-parallel
Strand 5	I	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	134	first strand
Strand 2	J	4	11	anti-parallel
Strand 3	J	89	96	anti-parallel
Strand 4	J	78	84	anti-parallel
Strand 5	J	165	170	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	132	134	first strand
Strand 2	K	4	11	anti-parallel
Strand 3	K	147	148	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	132	134	first strand
Strand 2	K	4	11	anti-parallel
Strand 3	K	89	96	anti-parallel
Strand 4	K	78	84	anti-parallel
Strand 5	K	165	170	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCX