Analysis of interatomic Contacts of Structural Units in PDB entry:
5DCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DCY entry

There are 2 chains in PDB entry 5DCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 23PRO 388
B
 GLY 23PRO 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5DCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 49Right-handed alpha
Helix 2
AA2
A
87 96Right-handed alpha
Helix 3
AA3
A
114 130Right-handed alpha
Helix 4
AA4
A
144 149Right-handed 310
Helix 5
AA5
A
176 192Right-handed alpha
Helix 6
AA6
A
214 229Right-handed alpha
Helix 7
AA7
A
238 244Right-handed alpha
Helix 8
AA8
A
251 264Right-handed alpha
Helix 9
AA9
A
265 268Right-handed 310
Helix 10
AB1
A
281 294Right-handed alpha
Helix 11
AB2
A
308 314Right-handed alpha
Helix 12
AB3
A
316 327Right-handed alpha
Helix 13
AB4
A
333 338Right-handed alpha
Helix 14
AB5
A
339 347Right-handed alpha
Helix 15
AB6
A
356 362Right-handed alpha
Helix 16
AB7
A
369 384Right-handed alpha
Helix 17
AB8
B
41 49Right-handed alpha
Helix 18
AB9
B
70 74Right-handed 310
Helix 19
AC1
B
87 96Right-handed alpha
Helix 20
AC2
B
114 130Right-handed alpha
Helix 21
AC3
B
144 149Right-handed 310
Helix 22
AC4
B
176 192Right-handed alpha
Helix 23
AC5
B
214 229Right-handed alpha
Helix 24
AC6
B
238 244Right-handed alpha
Helix 25
AC7
B
251 264Right-handed alpha
Helix 26
AC8
B
265 268Right-handed 310
Helix 27
AC9
B
281 294Right-handed alpha
Helix 28
AD1
B
308 314Right-handed alpha
Helix 29
AD2
B
316 327Right-handed alpha
Helix 30
AD3
B
333 338Right-handed alpha
Helix 31
AD4
B
339 347Right-handed alpha
Helix 32
AD5
B
356 362Right-handed alpha
Helix 33
AD6
B
369 384Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5DCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
59 65parallel
Strand 3
A
30 35parallel
Strand 4
A
103 106parallel
Strand 5
A
138 142parallel
Strand 6
A
195 201parallel
Strand 7
A
270 274parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
249 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
297 298parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
59 65parallel
Strand 3
B
30 35parallel
Strand 4
B
103 106parallel
Strand 5
B
138 142parallel
Strand 6
B
195 201parallel
Strand 7
B
270 274parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
249 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
297 298parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il