Analysis of interatomic Contacts of Structural Units in PDB entry:
5DDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DDG entry

There are 4 chains in PDB entry 5DDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 225
B
 ASN 3LEU 225
C
 G 1 C 27
D
 G 1 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5DDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
107 114Right-handed alpha
Helix 4
AA4
A
122 124Right-handed 310
Helix 5
AA5
A
130 147Right-handed alpha
Helix 6
AA6
A
151 156Right-handed 310
Helix 7
AA7
A
161 174Right-handed alpha
Helix 8
AA8
A
178 189Right-handed alpha
Helix 9
AA9
A
213 220Right-handed alpha
Helix 10
AB1
B
4 8Right-handed 310
Helix 11
AB2
B
55 69Right-handed alpha
Helix 12
AB3
B
107 115Right-handed alpha
Helix 13
AB4
B
130 149Right-handed alpha
Helix 14
AB5
B
151 156Right-handed 310
Helix 15
AB6
B
161 174Right-handed alpha
Helix 16
AB7
B
178 189Right-handed alpha
Helix 17
AB8
B
213 220Right-handed alpha
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There are 6 sheets in PDB entry 5DDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
12 23anti-parallel
Strand 4
A
92 100parallel
Strand 5
A
74 81anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
12 23anti-parallel
Strand 3
A
26 33anti-parallel
Strand 4
A
116 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 199first strand
Strand 2
A
207 212anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
12 23anti-parallel
Strand 4
B
92 100parallel
Strand 5
B
74 81anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
12 23anti-parallel
Strand 3
B
26 33anti-parallel
Strand 4
B
116 120anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 199first strand
Strand 2
B
207 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il