Analysis of interatomic Contacts of Structural Units in PDB entry:
5DDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DDJ entry

There are 4 chains in PDB entry 5DDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 THR 1PRO 208
2
 LEU 9GLU 218
3
 GLY 1GLN 220
4
 SER 15ALA 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5DDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
14 19Right-handed 310
Helix 2
AA2
1
26 31Right-handed 310
Helix 3
AA3
1
33 37Right-handed 310
Helix 4
AA4
1
60 65Right-handed alpha
Helix 5
AA5
1
66 69Right-handed 310
Helix 6
AA6
1
94 98Right-handed 310
Helix 7
AA7
2
89 98Right-handed alpha
Helix 8
AA8
2
133 140Right-handed 310
Helix 9
AA9
3
43 51Right-handed alpha
Helix 10
AB1
3
94 96Right-handed 310
Helix 11
AB2
3
135 140Right-handed alpha
Helix 12
AB3
4
27 31Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5DDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
41 42first strand
Strand 2
1
176 186anti-parallel
Strand 3
1
71 79anti-parallel
Strand 4
1
115 117anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
41 42first strand
Strand 2
1
176 186anti-parallel
Strand 3
1
71 79anti-parallel
Strand 4
1
126 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
49 50first strand
Strand 2
1
167 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
15 19first strand
Strand 2
2
22 26anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
52 54first strand
Strand 2
2
209 211anti-parallel
Strand 3
2
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
62 69first strand
Strand 2
2
197 203anti-parallel
Strand 3
2
108 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
82 83first strand
Strand 2
2
177 185anti-parallel
Strand 3
2
120 126anti-parallel
Strand 4
2
145 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
53 54first strand
Strand 2
3
202 205anti-parallel
Strand 3
3
105 108anti-parallel
Strand 4
3
156 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
98 102first strand
Strand 2
3
210 214anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
145 148first strand
Strand 2
3
120 126anti-parallel
Strand 3
3
183 187anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il