Analysis of interatomic Contacts of Structural Units in PDB entry:
5DDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DDV entry

There is 1 chain in PDB entry 5DDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5DDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 24Right-handed 310
Helix 2
AA2
A
32 42Right-handed alpha
Helix 3
AA3
A
54 56Right-handed 310
Helix 4
AA4
A
57 68Right-handed alpha
Helix 5
AA5
A
82 92Right-handed alpha
Helix 6
AA6
A
111 126Right-handed alpha
Helix 7
AA7
A
166 179Right-handed alpha
Helix 8
AA8
A
185 193Right-handed alpha
Helix 9
AA9
A
212 225Right-handed alpha
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There are 3 sheets in PDB entry 5DDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
46 53parallel
Strand 3
A
3 8parallel
Strand 4
A
99 102parallel
Strand 5
A
156 165anti-parallel
Strand 6
A
127 133anti-parallel
Strand 7
A
199 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
30 31anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
145 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il