Analysis of interatomic Contacts of Structural Units in PDB entry:
5DE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DE0 entry

There are 4 chains in PDB entry 5DE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	THR 298
B	LYS 3	LYS 300
C	LYS 3	LEU 299
D	SER 4	LEU 299

There are 49 helices in PDB entry 5DE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	36	Right-handed alpha
Helix 2	AA2	A	36	48	Right-handed alpha
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	104	116	Right-handed alpha
Helix 5	AA5	A	117	119	Right-handed 310
Helix 6	AA6	A	151	159	Right-handed alpha
Helix 7	AA7	A	179	186	Right-handed alpha
Helix 8	AA8	A	187	196	Right-handed alpha
Helix 9	AA9	A	212	218	Right-handed alpha
Helix 10	AB1	A	253	264	Right-handed alpha
Helix 11	AB2	A	272	276	Right-handed 310
Helix 12	AB3	A	290	297	Right-handed alpha
Helix 13	AB4	B	26	36	Right-handed alpha
Helix 14	AB5	B	36	48	Right-handed alpha
Helix 15	AB6	B	60	65	Right-handed alpha
Helix 16	AB7	B	104	115	Right-handed alpha
Helix 17	AB8	B	116	119	Right-handed 310
Helix 18	AB9	B	151	159	Right-handed alpha
Helix 19	AC1	B	179	186	Right-handed alpha
Helix 20	AC2	B	187	196	Right-handed alpha
Helix 21	AC3	B	212	218	Right-handed alpha
Helix 22	AC4	B	253	264	Right-handed alpha
Helix 23	AC5	B	272	276	Right-handed 310
Helix 24	AC6	B	290	297	Right-handed alpha
Helix 25	AC7	C	26	36	Right-handed alpha
Helix 26	AC8	C	36	48	Right-handed alpha
Helix 27	AC9	C	60	65	Right-handed alpha
Helix 28	AD1	C	104	116	Right-handed alpha
Helix 29	AD2	C	117	119	Right-handed 310
Helix 30	AD3	C	151	159	Right-handed alpha
Helix 31	AD4	C	179	184	Right-handed alpha
Helix 32	AD5	C	187	196	Right-handed alpha
Helix 33	AD6	C	212	218	Right-handed alpha
Helix 34	AD7	C	253	264	Right-handed alpha
Helix 35	AD8	C	272	276	Right-handed 310
Helix 36	AD9	C	290	297	Right-handed alpha
Helix 37	AE1	D	26	36	Right-handed alpha
Helix 38	AE2	D	36	48	Right-handed alpha
Helix 39	AE3	D	62	66	Right-handed 310
Helix 40	AE4	D	104	116	Right-handed alpha
Helix 41	AE5	D	118	120	Right-handed 310
Helix 42	AE6	D	150	153	Right-handed 310
Helix 43	AE7	D	154	159	Right-handed alpha
Helix 44	AE8	D	179	184	Right-handed alpha
Helix 45	AE9	D	187	196	Right-handed alpha
Helix 46	AF1	D	212	218	Right-handed alpha
Helix 47	AF2	D	253	264	Right-handed alpha
Helix 48	AF3	D	272	276	Right-handed 310
Helix 49	AF4	D	290	295	Right-handed alpha

There are 17 sheets in PDB entry 5DE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	15	23	anti-parallel
Strand 4	A	122	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	86	88	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	242	250	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	278	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	242	250	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	284	288	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	15	23	anti-parallel
Strand 4	B	122	131	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	86	88	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	242	250	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	278	280	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	236	first strand
Strand 2	B	242	250	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	284	288	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	59	first strand
Strand 2	C	95	101	anti-parallel
Strand 3	C	15	23	anti-parallel
Strand 4	C	122	131	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	86	88	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	242	250	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	278	280	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	236	first strand
Strand 2	C	242	250	anti-parallel
Strand 3	C	169	178	anti-parallel
Strand 4	C	284	288	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	224	225	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	59	first strand
Strand 2	D	95	101	anti-parallel
Strand 3	D	15	23	anti-parallel
Strand 4	D	122	131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	86	88	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	242	250	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	278	280	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	236	first strand
Strand 2	D	242	250	anti-parallel
Strand 3	D	169	178	anti-parallel
Strand 4	D	284	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DE0