Analysis of interatomic Contacts of Structural Units in PDB entry:
5DE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DE2 entry

There are 4 chains in PDB entry 5DE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 20ALA 300
B
 LYS 20ALA 300
C
 GLY 810PRO 825
D
 GLY 810ASN 818
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5DE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 32Right-handed 310
Helix 2
AA2
A
72 87Right-handed alpha
Helix 3
AA3
A
118 129Right-handed alpha
Helix 4
AA4
A
134 155Right-handed alpha
Helix 5
AA5
A
163 165Right-handed 310
Helix 6
AA6
A
204 209Right-handed alpha
Helix 7
AA7
A
214 232Right-handed alpha
Helix 8
AA8
A
242 253Right-handed alpha
Helix 9
AA9
A
264 275Right-handed alpha
Helix 10
AB1
A
278 282Right-handed 310
Helix 11
AB2
A
284 300Right-handed alpha
Helix 12
AB3
B
30 32Right-handed 310
Helix 13
AB4
B
72 86Right-handed alpha
Helix 14
AB5
B
119 128Right-handed alpha
Helix 15
AB6
B
134 155Right-handed alpha
Helix 16
AB7
B
163 165Right-handed 310
Helix 17
AB8
B
204 209Right-handed alpha
Helix 18
AB9
B
216 232Right-handed alpha
Helix 19
AC1
B
242 253Right-handed alpha
Helix 20
AC2
B
264 275Right-handed alpha
Helix 21
AC3
B
278 282Right-handed 310
Helix 22
AC4
B
284 298Right-handed alpha
Helix 23
AC5
C
811 818Right-handed alpha
Helix 24
AC6
D
811 816Right-handed alpha
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There are 4 sheets in PDB entry 5DE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 42first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
106 111anti-parallel
Strand 5
A
97 103anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
175 177anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 42first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
107 112anti-parallel
Strand 5
B
97 102anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
167 169anti-parallel
Strand 3
B
175 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il