Analysis of interatomic Contacts of Structural Units in PDB entry:
5DE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DE3 entry

There is 1 chain in PDB entry 5DE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17HIS 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5DE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 37Right-handed alpha
Helix 2
AA2
A
70 81Right-handed 310
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
98 111Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
134 142Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
164 177Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5DE3.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
18 22parallel
Strand 4
A
86 92parallel
Strand 5
A
120 125parallel
Strand 6
A
152 156parallel
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