Analysis of interatomic Contacts of Structural Units in PDB entry:
5DE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DE9 entry

There are 2 chains in PDB entry 5DE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5HIS 406
B
 THR 5HIS 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5DE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 37Right-handed alpha
Helix 2
AA2
A
56 66Right-handed alpha
Helix 3
AA3
A
71 77Right-handed 310
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
100 113Right-handed alpha
Helix 6
AA6
A
113 119Right-handed alpha
Helix 7
AA7
A
120 139Right-handed alpha
Helix 8
AA8
A
144 148Right-handed alpha
Helix 9
AA9
A
150 162Right-handed alpha
Helix 10
AB1
A
164 166Right-handed 310
Helix 11
AB2
A
167 178Right-handed alpha
Helix 12
AB3
A
185 206Right-handed alpha
Helix 13
AB4
A
213 224Right-handed alpha
Helix 14
AB5
A
228 242Right-handed alpha
Helix 15
AB6
A
243 260Right-handed alpha
Helix 16
AB7
A
260 270Right-handed alpha
Helix 17
AB8
A
273 285Right-handed alpha
Helix 18
AB9
A
317 322Right-handed alpha
Helix 19
AC1
A
355 374Right-handed alpha
Helix 20
AC2
A
382 386Right-handed 310
Helix 21
AC3
B
27 37Right-handed alpha
Helix 22
AC4
B
56 66Right-handed alpha
Helix 23
AC5
B
71 77Right-handed 310
Helix 24
AC6
B
92 96Right-handed 310
Helix 25
AC7
B
99 113Right-handed alpha
Helix 26
AC8
B
113 119Right-handed alpha
Helix 27
AC9
B
120 139Right-handed alpha
Helix 28
AD1
B
144 148Right-handed alpha
Helix 29
AD2
B
150 162Right-handed alpha
Helix 30
AD3
B
164 166Right-handed 310
Helix 31
AD4
B
167 178Right-handed alpha
Helix 32
AD5
B
187 206Right-handed alpha
Helix 33
AD6
B
213 224Right-handed alpha
Helix 34
AD7
B
228 242Right-handed alpha
Helix 35
AD8
B
243 260Right-handed alpha
Helix 36
AD9
B
260 270Right-handed alpha
Helix 37
AE1
B
273 285Right-handed alpha
Helix 38
AE2
B
317 322Right-handed alpha
Helix 39
AE3
B
355 374Right-handed alpha
Helix 40
AE4
B
382 386Right-handed 310
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There are 6 sheets in PDB entry 5DE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
39 43parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
313 316parallel
Strand 5
A
295 297anti-parallel
Strand 6
A
69 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
378 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 308anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
39 43parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
313 316parallel
Strand 5
B
295 297anti-parallel
Strand 6
B
69 70anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
401 403anti-parallel
Strand 3
B
378 379anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 303first strand
Strand 2
B
306 308anti-parallel
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