Analysis of interatomic Contacts of Structural Units in PDB entry:
5DED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DED entry

There are 8 chains in PDB entry 5DED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 3	ALA 197
A	ASP 3	ALA 198
B	ASP 3	ALA 196
C	ASP 3	GLU 196
E	ASP 3	GLU 196
F	ASP 3	ALA 195
G	ASP 3	ALA 197
H	ASP 3	ALA 196

There are 51 helices in PDB entry 5DED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	3	10	Right-handed alpha
Helix 2	AA2	D	10	31	Right-handed alpha
Helix 3	AA3	D	32	34	Right-handed 310
Helix 4	AA4	D	49	60	Right-handed alpha
Helix 5	AA5	D	63	70	Right-handed 310
Helix 6	AA6	D	84	96	Right-handed alpha
Helix 7	AA7	D	145	157	Right-handed alpha
Helix 8	AA8	D	167	191	Right-handed alpha
Helix 9	AA9	A	4	30	Right-handed alpha
Helix 10	AB1	A	49	60	Right-handed alpha
Helix 11	AB2	A	63	70	Right-handed 310
Helix 12	AB3	A	82	96	Right-handed alpha
Helix 13	AB4	A	145	161	Right-handed alpha
Helix 14	AB5	A	166	195	Right-handed alpha
Helix 15	AB6	B	4	34	Right-handed alpha
Helix 16	AB7	B	49	59	Right-handed alpha
Helix 17	AB8	B	82	96	Right-handed alpha
Helix 18	AB9	B	145	160	Right-handed alpha
Helix 19	AC1	B	168	194	Right-handed alpha
Helix 20	AC2	C	10	33	Right-handed alpha
Helix 21	AC3	C	49	60	Right-handed alpha
Helix 22	AC4	C	63	70	Right-handed 310
Helix 23	AC5	C	82	96	Right-handed alpha
Helix 24	AC6	C	145	162	Right-handed alpha
Helix 25	AC7	C	166	195	Right-handed alpha
Helix 26	AC8	E	4	30	Right-handed alpha
Helix 27	AC9	E	31	35	Right-handed 310
Helix 28	AD1	E	49	60	Right-handed alpha
Helix 29	AD2	E	63	70	Right-handed 310
Helix 30	AD3	E	82	96	Right-handed alpha
Helix 31	AD4	E	145	160	Right-handed alpha
Helix 32	AD5	E	166	195	Right-handed alpha
Helix 33	AD6	F	4	30	Right-handed alpha
Helix 34	AD7	F	49	60	Right-handed alpha
Helix 35	AD8	F	63	70	Right-handed 310
Helix 36	AD9	F	82	96	Right-handed alpha
Helix 37	AE1	F	145	158	Right-handed alpha
Helix 38	AE2	F	173	193	Right-handed alpha
Helix 39	AE3	G	4	10	Right-handed alpha
Helix 40	AE4	G	10	30	Right-handed alpha
Helix 41	AE5	G	49	58	Right-handed alpha
Helix 42	AE6	G	63	70	Right-handed 310
Helix 43	AE7	G	82	96	Right-handed alpha
Helix 44	AE8	G	145	157	Right-handed alpha
Helix 45	AE9	G	166	196	Right-handed alpha
Helix 46	AF1	H	4	31	Right-handed alpha
Helix 47	AF2	H	49	60	Right-handed alpha
Helix 48	AF3	H	63	70	Right-handed 310
Helix 49	AF4	H	82	96	Right-handed alpha
Helix 50	AF5	H	145	161	Right-handed alpha
Helix 51	AF6	H	166	194	Right-handed alpha

There are 8 sheets in PDB entry 5DED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	47	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	133	144	parallel
Strand 4	D	119	128	anti-parallel
Strand 5	D	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	74	80	anti-parallel
Strand 3	A	133	144	parallel
Strand 4	A	119	128	anti-parallel
Strand 5	A	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	74	80	anti-parallel
Strand 3	B	133	144	parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	47	first strand
Strand 2	C	74	80	anti-parallel
Strand 3	C	133	144	parallel
Strand 4	C	119	128	anti-parallel
Strand 5	C	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	47	first strand
Strand 2	E	74	80	anti-parallel
Strand 3	E	135	144	parallel
Strand 4	E	119	126	anti-parallel
Strand 5	E	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	47	first strand
Strand 2	F	74	80	anti-parallel
Strand 3	F	135	144	parallel
Strand 4	F	119	126	anti-parallel
Strand 5	F	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	47	first strand
Strand 2	G	74	80	anti-parallel
Strand 3	G	133	144	parallel
Strand 4	G	119	128	anti-parallel
Strand 5	G	100	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	47	first strand
Strand 2	H	74	80	anti-parallel
Strand 3	H	134	144	parallel
Strand 4	H	119	127	anti-parallel
Strand 5	H	100	106	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DED

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DED