Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5DEI entry

There are 2 chains in PDB entry 5DEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	SER 526
B	ALA 3	SER 141

There are108 helices in PDB entry 5DEI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	16	Right-handed alpha
Helix 2	AA2	A	26	28	Right-handed 310
Helix 3	AA3	A	29	34	Right-handed alpha
Helix 4	AA4	A	47	63	Right-handed alpha
Helix 5	AA5	A	72	79	Right-handed alpha
Helix 6	AA6	A	79	89	Right-handed alpha
Helix 7	AA7	A	101	106	Right-handed alpha
Helix 8	AA8	A	115	119	Right-handed 310
Helix 9	AA9	A	132	134	Right-handed 310
Helix 10	AB1	A	135	149	Right-handed alpha
Helix 11	AB2	A	162	164	Right-handed 310
Helix 12	AB3	A	169	176	Right-handed 310
Helix 13	AB4	A	187	201	Right-handed alpha
Helix 14	AB5	A	209	215	Right-handed alpha
Helix 15	AB6	A	217	229	Right-handed alpha
Helix 16	AB7	A	257	266	Right-handed alpha
Helix 17	AB8	A	302	309	Right-handed alpha
Helix 18	AB9	A	318	330	Right-handed alpha
Helix 19	AC1	A	355	367	Right-handed alpha
Helix 20	AC2	A	380	388	Right-handed alpha
Helix 21	AC3	A	406	418	Right-handed alpha
Helix 22	AC4	A	430	434	Right-handed 310
Helix 23	AC5	A	435	437	Right-handed 310
Helix 24	AC6	A	438	446	Right-handed alpha
Helix 25	AC7	A	459	469	Right-handed alpha
Helix 26	AC8	A	483	491	Right-handed alpha
Helix 27	AC9	A	500	513	Right-handed alpha
Helix 28	AD1	B	4	16	Right-handed alpha
Helix 29	AD2	B	26	28	Right-handed 310
Helix 30	AD3	B	29	34	Right-handed alpha
Helix 31	AD4	B	47	63	Right-handed alpha
Helix 32	AD5	B	72	79	Right-handed alpha
Helix 33	AD6	B	79	89	Right-handed alpha
Helix 34	AD7	B	101	106	Right-handed alpha
Helix 35	AD8	B	115	119	Right-handed 310
Helix 36	AD9	B	132	134	Right-handed 310
Helix 37	AE1	B	135	149	Right-handed alpha
Helix 38	AE2	B	162	164	Right-handed 310
Helix 39	AE3	B	169	176	Right-handed 310
Helix 40	AE4	B	187	201	Right-handed alpha
Helix 41	AE5	B	209	215	Right-handed alpha
Helix 42	AE6	B	217	229	Right-handed alpha
Helix 43	AE7	B	257	266	Right-handed alpha
Helix 44	AE8	B	302	309	Right-handed alpha
Helix 45	AE9	B	318	330	Right-handed alpha
Helix 46	AF1	B	355	367	Right-handed alpha
Helix 47	AF2	B	380	388	Right-handed alpha
Helix 48	AF3	B	406	418	Right-handed alpha
Helix 49	AF4	B	430	434	Right-handed 310
Helix 50	AF5	B	435	437	Right-handed 310
Helix 51	AF6	B	438	445	Right-handed alpha
Helix 52	AF7	B	459	469	Right-handed alpha
Helix 53	AF8	B	483	491	Right-handed alpha
Helix 54	AF9	B	500	513	Right-handed alpha
Helix 55	AG1	C	4	16	Right-handed alpha
Helix 56	AG2	C	26	28	Right-handed 310
Helix 57	AG3	C	29	34	Right-handed alpha
Helix 58	AG4	C	47	63	Right-handed alpha
Helix 59	AG5	C	72	79	Right-handed alpha
Helix 60	AG6	C	79	89	Right-handed alpha
Helix 61	AG7	C	101	106	Right-handed alpha
Helix 62	AG8	C	115	119	Right-handed 310
Helix 63	AG9	C	132	134	Right-handed 310
Helix 64	AH1	C	135	149	Right-handed alpha
Helix 65	AH2	C	162	164	Right-handed 310
Helix 66	AH3	C	171	176	Right-handed 310
Helix 67	AH4	C	187	201	Right-handed alpha
Helix 68	AH5	C	209	215	Right-handed alpha
Helix 69	AH6	C	217	229	Right-handed alpha
Helix 70	AH7	C	257	266	Right-handed alpha
Helix 71	AH8	C	302	309	Right-handed alpha
Helix 72	AH9	C	318	330	Right-handed alpha
Helix 73	AI1	C	355	367	Right-handed alpha
Helix 74	AI2	C	380	388	Right-handed alpha
Helix 75	AI3	C	406	418	Right-handed alpha
Helix 76	AI4	C	429	433	Right-handed alpha
Helix 77	AI5	C	434	437	Right-handed 310
Helix 78	AI6	C	438	445	Right-handed alpha
Helix 79	AI7	C	459	469	Right-handed alpha
Helix 80	AI8	C	483	491	Right-handed alpha
Helix 81	AI9	C	500	513	Right-handed alpha
Helix 82	AJ1	D	4	16	Right-handed alpha
Helix 83	AJ2	D	26	28	Right-handed 310
Helix 84	AJ3	D	29	34	Right-handed alpha
Helix 85	AJ4	D	47	63	Right-handed alpha
Helix 86	AJ5	D	72	79	Right-handed alpha
Helix 87	AJ6	D	79	89	Right-handed alpha
Helix 88	AJ7	D	101	106	Right-handed alpha
Helix 89	AJ8	D	115	119	Right-handed 310
Helix 90	AJ9	D	132	134	Right-handed 310
Helix 91	AK1	D	135	149	Right-handed alpha
Helix 92	AK2	D	162	164	Right-handed 310
Helix 93	AK3	D	169	176	Right-handed 310
Helix 94	AK4	D	187	201	Right-handed alpha
Helix 95	AK5	D	209	215	Right-handed alpha
Helix 96	AK6	D	217	229	Right-handed alpha
Helix 97	AK7	D	257	266	Right-handed alpha
Helix 98	AK8	D	302	309	Right-handed alpha
Helix 99	AK9	D	318	330	Right-handed alpha
Helix 100	AL1	D	355	367	Right-handed alpha
Helix 101	AL2	D	380	388	Right-handed alpha
Helix 102	AL3	D	406	418	Right-handed alpha
Helix 103	AL4	D	429	433	Right-handed alpha
Helix 104	AL5	D	434	437	Right-handed 310
Helix 105	AL6	D	438	446	Right-handed alpha
Helix 106	AL7	D	459	469	Right-handed alpha
Helix 107	AL8	D	483	491	Right-handed alpha
Helix 108	AL9	D	500	513	Right-handed alpha

There are 14 sheets in PDB entry 5DEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	20	23	parallel
Strand 3	A	66	71	parallel
Strand 4	A	93	99	parallel
Strand 5	A	155	160	parallel
Strand 6	A	127	128	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	D	313	316	parallel
Strand 3	D	295	300	parallel
Strand 4	D	270	274	parallel
Strand 5	D	205	208	parallel
Strand 6	D	232	234	parallel
Strand 7	D	250	253	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	D	184	186	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	232	234	parallel
Strand 3	A	205	208	parallel
Strand 4	A	270	274	parallel
Strand 5	A	295	300	parallel
Strand 6	A	313	316	parallel
Strand 7	D	180	181	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	372	376	parallel
Strand 3	A	423	428	parallel
Strand 4	A	450	455	parallel
Strand 5	A	518	523	parallel
Strand 6	A	494	498	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	20	23	parallel
Strand 3	B	66	71	parallel
Strand 4	B	93	99	parallel
Strand 5	B	155	160	parallel
Strand 6	B	127	128	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	C	313	316	parallel
Strand 3	C	295	300	parallel
Strand 4	C	270	274	parallel
Strand 5	C	205	208	parallel
Strand 6	C	232	234	parallel
Strand 7	C	250	253	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	C	184	186	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	232	234	parallel
Strand 3	B	205	208	parallel
Strand 4	B	270	274	parallel
Strand 5	B	295	300	parallel
Strand 6	B	313	316	parallel
Strand 7	C	180	181	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	372	376	parallel
Strand 3	B	423	428	parallel
Strand 4	B	450	455	parallel
Strand 5	B	518	523	parallel
Strand 6	B	494	498	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	20	23	parallel
Strand 3	C	66	71	parallel
Strand 4	C	93	99	parallel
Strand 5	C	155	160	parallel
Strand 6	C	127	128	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	372	376	parallel
Strand 3	C	423	428	parallel
Strand 4	C	450	455	parallel
Strand 5	C	518	523	parallel
Strand 6	C	494	498	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	20	23	parallel
Strand 3	D	66	71	parallel
Strand 4	D	93	99	parallel
Strand 5	D	155	160	parallel
Strand 6	D	127	128	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	398	first strand
Strand 2	D	372	376	parallel
Strand 3	D	423	428	parallel
Strand 4	D	450	455	parallel
Strand 5	D	518	523	parallel
Strand 6	D	494	498	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5DEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEI