Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DEO entry

There are 4 chains in PDB entry 5DEO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4SER 201
B
 ARG 5SER 201
C
 ARG 5SER 201
D
 ARG 5GLY 202
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 5DEO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 33Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
78 84Right-handed alpha
Helix 4
AA4
A
88 100Right-handed alpha
Helix 5
AA5
A
111 115Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
122 124Right-handed 310
Helix 8
AA8
A
125 130Right-handed alpha
Helix 9
AA9
A
144 148Right-handed 310
Helix 10
AB1
A
168 178Right-handed alpha
Helix 11
AB2
A
187 198Right-handed alpha
Helix 12
AB3
B
19 33Right-handed alpha
Helix 13
AB4
B
56 69Right-handed alpha
Helix 14
AB5
B
78 84Right-handed alpha
Helix 15
AB6
B
88 100Right-handed alpha
Helix 16
AB7
B
111 116Right-handed alpha
Helix 17
AB8
B
117 120Right-handed 310
Helix 18
AB9
B
122 130Right-handed alpha
Helix 19
AC1
B
168 178Right-handed alpha
Helix 20
AC2
B
187 197Right-handed alpha
Helix 21
AC3
C
19 33Right-handed alpha
Helix 22
AC4
C
56 69Right-handed alpha
Helix 23
AC5
C
78 84Right-handed alpha
Helix 24
AC6
C
88 100Right-handed alpha
Helix 25
AC7
C
111 116Right-handed alpha
Helix 26
AC8
C
117 119Right-handed 310
Helix 27
AC9
C
122 129Right-handed 310
Helix 28
AD1
C
168 178Right-handed alpha
Helix 29
AD2
C
187 198Right-handed alpha
Helix 30
AD3
D
19 33Right-handed alpha
Helix 31
AD4
D
56 69Right-handed alpha
Helix 32
AD5
D
78 84Right-handed alpha
Helix 33
AD6
D
88 100Right-handed alpha
Helix 34
AD7
D
111 116Right-handed alpha
Helix 35
AD8
D
117 120Right-handed 310
Helix 36
AD9
D
125 130Right-handed alpha
Helix 37
AE1
D
168 178Right-handed alpha
Helix 38
AE2
D
187 198Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5DEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
38 42parallel
Strand 3
A
6 13parallel
Strand 4
A
103 110parallel
Strand 5
A
131 135parallel
Strand 6
A
157 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
37 42parallel
Strand 3
B
6 13parallel
Strand 4
B
103 110parallel
Strand 5
B
131 135parallel
Strand 6
B
157 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
C
37 42parallel
Strand 3
C
6 13parallel
Strand 4
C
103 110parallel
Strand 5
C
132 135parallel
Strand 6
C
157 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 76first strand
Strand 2
D
37 42parallel
Strand 3
D
7 13parallel
Strand 4
D
104 110parallel
Strand 5
D
131 135parallel
Strand 6
D
157 160parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il