Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DEQ entry

There are 2 chains in PDB entry 5DEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 218
B
 ASN 3LEU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5DEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 69Right-handed alpha
Helix 2
AA2
A
104 114Right-handed alpha
Helix 3
AA3
A
130 149Right-handed alpha
Helix 4
AA4
A
161 174Right-handed alpha
Helix 5
AA5
A
178 188Right-handed alpha
Helix 6
AA6
A
214 218Right-handed 310
Helix 7
AA7
B
55 69Right-handed alpha
Helix 8
AA8
B
107 114Right-handed alpha
Helix 9
AA9
B
130 149Right-handed alpha
Helix 10
AB1
B
161 174Right-handed alpha
Helix 11
AB2
B
178 189Right-handed alpha
Helix 12
AB3
B
213 218Right-handed alpha
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There are 6 sheets in PDB entry 5DEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
12 23anti-parallel
Strand 4
A
92 102parallel
Strand 5
A
76 81anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
12 23anti-parallel
Strand 3
A
26 33anti-parallel
Strand 4
A
116 120anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 198first strand
Strand 2
A
208 212anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
12 23anti-parallel
Strand 4
B
92 102parallel
Strand 5
B
76 81anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
12 23anti-parallel
Strand 3
B
26 33anti-parallel
Strand 4
B
116 120anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 198first strand
Strand 2
B
208 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il