Analysis of interatomic Contacts of Structural Units in PDB entry:
5DEX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5DEX entry

There are 2 chains in PDB entry 5DEX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5ARG 286
B
 ASP 6HIS 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5DEX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 78Right-handed alpha
Helix 2
AA2
A
107 115Right-handed alpha
Helix 3
AA3
A
128 133Right-handed alpha
Helix 4
AA4
A
161 166Right-handed alpha
Helix 5
AA5
A
179 187Right-handed alpha
Helix 6
AA6
A
188 190Right-handed 310
Helix 7
AA7
A
191 199Right-handed alpha
Helix 8
AA8
A
205 215Right-handed alpha
Helix 9
AA9
A
225 235Right-handed alpha
Helix 10
AB1
A
260 274Right-handed alpha
Helix 11
AB2
A
275 284Right-handed alpha
Helix 12
AB3
B
61 74Right-handed alpha
Helix 13
AB4
B
97 105Right-handed alpha
Helix 14
AB5
B
118 123Right-handed alpha
Helix 15
AB6
B
151 156Right-handed alpha
Helix 16
AB7
B
157 160Right-handed 310
Helix 17
AB8
B
172 182Right-handed alpha
Helix 18
AB9
B
182 190Right-handed alpha
Helix 19
AC1
B
191 193Right-handed 310
Helix 20
AC2
B
196 206Right-handed alpha
Helix 21
AC3
B
216 225Right-handed alpha
Helix 22
AC4
B
235 239Right-handed 310
Helix 23
AC5
B
255 269Right-handed alpha
Helix 24
AC6
B
270 280Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5DEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
82 86parallel
Strand 5
A
6 10parallel
Strand 6
A
120 126parallel
Strand 7
A
246 255anti-parallel
Strand 8
A
142 151anti-parallel
Strand 9
A
220 224anti-parallel
Strand 10
A
173 174parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
246 255anti-parallel
Strand 3
A
142 151anti-parallel
Strand 4
A
238 240anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
B
8 13parallel
Strand 3
B
110 111parallel
Strand 4
B
248 250anti-parallel
Strand 5
B
125 127anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
52 60anti-parallel
Strand 3
B
37 44anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
95 96anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
211 215parallel
Strand 3
B
132 141anti-parallel
Strand 4
B
231 233anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
211 215parallel
Strand 3
B
132 141anti-parallel
Strand 4
B
240 245anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il